Bradysia coprophila: 119076249
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Entry
119076249 CDS
T08269
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119076249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcoo03021
]
119076249
03019 Messenger RNA biogenesis [BR:
bcoo03019
]
119076249
Transcription machinery [BR:
bcoo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119076249
Messenger RNA biogenesis [BR:
bcoo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
119076249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
119076249
NCBI-ProteinID:
XP_037038810
LinkDB
All DBs
Position
Unknown
AA seq
1428 aa
AA seq
DB search
MFSICKQTHPATGIEFSITCRFFNNSEENIVTGGANVLKVFRIIPDVDPTNTTDKFSELR
PPKMRLECMCTYTLYGNIMSLQSVSLAGSQRDALLISFKDAKLSVVQHDPDTFELKTLSL
HYFEEDDIKGGWTSNYHIPMVRVDPDNRCAVMVAYGKKLVVLPFRRDSSLDEIELQDVKP
MKKTPVQLIAKTPILASYIITLKDLDEKIDNLIDIQFLHGYYEPTLLIVYEPVRTFPGRI
AVRTDTCTMVAISLNIQQRVHPIIWTVSALPFDCSQVLAIKKPIGGCLVMSHNALIYLNQ
SVPPYGVSLNSIADHSTSFPLKPQSDVTISLDAAQVAFIDYDKLVLSLKGGELYVLTLCA
DSMRSVRSFHFSKAASSVLTSCLTICCEEYLFLGSRLGNSLLLRFTEKDHSTVITIDDTD
HTEKEKEKGASMPIVLVQQWNDLFRLQIXPRKRLEEEELEVYGSGEKTSVQLTSFTFEVC
DSVQNIAPIGFMTIGERCSEEYVKTENEVEAKADLEVVTSSGRGKNGALCVLQSTIKPHI
ITSFSLSGCRDVWTVFDDPNQDGSDKHKFMILSQKSSTMILQTGDEINEIENTGFCNNQT
TIYVGNLGNNRYIAQILTKNIRLLQGTRLLQNIQIDIDSPLNLVSIVDPYICVKTESGQV
ITLALRETKGVPRLAVNKNTISPTPAVVAMSAYKDVSGLLTHKLETINLTSGNDFMNTGY
MKPEPNMKIEDEEDLLYGESGNAFKVTSIVDLAIPSKTKRSDWWRRLIQTNKPTYWLFVT
RTNGNLEIYFMPDMKLVYIVNNVGNGNKVLSDSMEFVPLSFGADDVIHGDISSQNFSSNV
NAGFVKEILMVGLGNRGSRPTLFVRTETDILIYRVYRYCRGHLKIRFRKLNHSILIPKPK
ISEEEPDEESLDTNVAKMRYFQNISAHNGVLICGDRPYMVLLSARGELRTHSFFGSTIMR
SFASFNNVNCPNGLIYFDEQNELQIAIFPSYLSYDAQWPIRKVPLRCTPTFITYHKESKV
YCLVTDTEEASTKYYRFNGEDKELTEESKGERFIYPSVSKFQVVLVSPTTWEVVPKTSIE
LEEWEHVISFKNVHLAYEGTRSGFKEYICVGTNYNYSEDITSRGRILLYDIIQVVPEPDA
PLTCFKLKEVYIKEQKGPVSAITHVLGFLVTAVGQKIYLWQLKDNDLIGVAFIDTNIYVH
QMVSIKSLILVADVYKSINLLRFQEEYRTLSLVSRDYNLLNVLNVEFMVDNTNLGFLSMD
TSENLIIYMYQPESRDSFGGQKLLRKADYHIGQKVNAMFRIQCNNSMIGQWNYGNDTKHT
TFFATLDGGLGYCVPLPEKTYRRLLMLQNVLLTHLEHLCGLNPKTFRTIKSQHRANMNPS
RCVVDGDLVWSFLNLPLNEKQEVSKKIGTKISEIYSDLLEIEYMTSSF
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgttttcaatttgcaaacaaacgcatcctgccacaggaatcgaattctctattacctgt
cggtttttcaacaattccgaggagaatatagtgaccggtggagcgaatgtattgaaagtg
tttcgtatcattcctgatgtggatccgaccaatacaacggataaatttagcgaactccga
ccaccgaaaatgcgactcgaatgcatgtgtacatacaccctatacggcaacataatgtca
ctgcaatccgtatcgctagccggttcacagcgtgacgctttgctaattagttttaaagat
gctaagctgtcggttgttcaacatgatcccgacacgttcgagctgaaaacgttatctttg
cactacttcgaggaggatgatatcaagggaggttggacgagtaattatcatattccaatg
gtgcgtgtggatccagacaatcgttgtgcggtaatggtcgcctatgggaagaaattggtg
gtattgccatttcggcgagacagttcgttggacgaaattgaattgcaagatgtgaagcca
atgaaaaagacaccggttcaattgattgcgaagacacccatattggcctcgtacatcata
acgctgaaggatttggacgagaaaatcgacaacttgattgatattcagttcttgcatgga
tactatgagccaacgctgttgatcgtttacgaaccagttcgaacatttcccggtcgaata
gcggttcgaacggacacttgcactatggtcgccatttcactcaatattcaacagcgtgtg
catccgattatttggaccgtatcagctttaccattcgactgttcgcaagtactggccatc
aaaaaaccgattggtggatgtttagtgatgtcacacaatgccttgatatatttgaatcaa
agtgtacctccatacggcgtcagcttgaatagtatcgcagaccatagtacgagttttcca
ttgaaaccacagagtgatgttaccatcagtttggatgcggcacaggttgcattcattgat
tacgacaagttggtactatctctcaaaggaggtgaattgtatgtgctgacgctttgtgcc
gattccatgagaagcgttcgaagttttcactttagcaaagccgctagttcagtgctgact
agttgcttaactatttgctgcgaagaatatctgttcctcggttcgcgtctgggcaactca
ttactcttgagattcaccgaaaaggatcacagtaccgtaataaccattgacgatacggat
cataccgaaaaggagaaagagaaaggtgcgtcgatgccgatagttctcgtccagcaatgg
aatgatttgtttcgtttacagatanatccacgaaagcgcctagaagaagaagaattggag
gtgtatggtagcggtgagaaaacgtccgttcaattaaccagttttacattcgaagtgtgc
gacagtgtgcaaaacatcgctcccatcggctttatgacaattggggaaagatgttcggag
gagtatgttaaaacagaaaatgaggtcgaggccaaagctgatttggaagtggtcacgtca
agtggacgagggaaaaatggtgcgctctgtgtactgcagagtacgataaagccacacatt
atcaccagtttcagtttgtcggggtgtcgcgatgtgtggacggtgttcgatgatcccaat
caggatggcagtgacaaacataaatttatgattctttctcaaaaatcgtctacgatgatt
cttcaaacgggcgacgagataaatgaaatcgaaaacaccggattttgtaacaatcaaacg
acgatctacgtgggaaatctcggaaacaatcgttacatcgctcagattttgacgaagaat
atacgactgctgcagggtacgcgcctgctacaaaacattcagattgacatagacagtcca
ctgaatttggtgtcgattgtcgatccgtacatttgtgtgaaaacggaaagtggacaggtt
atcacacttgctctgcgagaaacaaaaggtgttcctagactggctgttaacaagaatacc
atcagtccgacaccggcagttgtagctatgagtgcgtacaaggatgtgtcgggactgttg
acacataaattggaaacgataaatttgaccagcggaaatgactttatgaacacaggatac
atgaaaccggaaccgaacatgaaaatcgaggatgaagaggacttgctgtacggcgaaagt
ggaaatgcattcaaagtaacgagtattgtggatttagctattccgtcgaaaaccaaacgt
tcggactggtggcgccgattaattcagacaaataaaccgacctattggttgttcgtaacg
cgcaccaacggcaatttagagatctatttcatgccagatatgaaattggtgtacattgtg
aataacgttggtaatggtaacaaggttttgagcgattcaatggaatttgtaccgctgtct
ttcggggctgacgatgtcattcatggcgacatttcctcgcaaaatttcagttcaaatgta
aatgcgggattcgttaaagaaattctgatggtcggactcggtaacaggggatcgagaccg
acattgttcgttcgcactgaaactgacatattaatttaccgagtgtaccggtattgtcgc
ggtcatttgaagatccgcttccgtaaactcaatcacagcattttgataccgaaaccaaag
atttctgaagaggaaccggacgaagaatctttagacacgaatgtggccaagatgcgatac
tttcaaaatatatccgctcacaacggagtattaatttgcggcgataggccctacatggtg
ctgttaagtgctagaggagagctcagaacgcacagctttttcggttcgaccataatgcgc
agtttcgcctcgttcaataatgtcaactgtccgaacggtttgatttatttcgatgaacag
aacgaactgcaaattgccattttcccatcgtatctgtcgtacgatgcccaatggccaatt
agaaaggtgccgcttcgttgcacaccgacatttatcacttatcacaaggagagtaaagtt
tactgcttggtaacggacacagaagaggcgagcactaaatattatcggttcaatggcgaa
gataaagaattgaccgaggagagtaaaggggaacggttcatctatccttccgtgagtaaa
ttccaggtagttctggtatcaccgacgacatgggaagtggtaccaaaaacttccatcgaa
ctggaagagtgggaacatgtcatttccttcaaaaatgttcacttggcctatgagggaacg
aggtccggtttcaaggagtatatctgcgttggtacgaactacaattacagcgaggacatt
acatcacgtggacgtattctgctatacgatattattcaagtcgtgccagaaccagacgca
ccactcacatgtttcaagttgaaagaagtttacatcaaggaacaaaaaggtccagtgtcg
gctatcactcacgtgcttggctttttggttacagcggttggacagaagatctacctctgg
caattgaaagacaatgacctgatcggcgtcgcctttatcgacactaacatctacgtgcat
cagatggtctcaatcaaatcattgattttagtcgccgatgtgtacaaatcgataaatttg
ttacgattccaagaggaatatcgaacattgtctcttgtatcaagggactacaatttgctg
aacgttttgaatgttgaatttatggtcgacaatacgaatctgggatttctttccatggac
accagtgaaaatttgatcatctacatgtaccaaccggaatcgagggattcattcggagga
caaaaactgctaagaaaagctgactatcacataggccaaaaagtgaatgccatgttcagg
attcaatgcaacaattcgatgataggccaatggaactatgggaacgataccaaacacacc
acatttttcgcaacattggatggaggtctgggctattgcgttccactgccggagaaaaca
taccgtcgcttgctgatgctgcaaaatgtccttctcacgcaccttgaacatttatgtgga
ctaaacccgaaaacattccgaacaatcaaaagccaacatcgggccaatatgaatccgtct
cgctgtgttgttgatggtgatttggtttggtcatttttgaatttgccgctgaacgagaaa
caagaagtgtcgaagaaaattggcacaaagatcagcgaaatttactcggatttgttggaa
attgaatacatgacgtcaagcttttga
DBGET
integrated database retrieval system
