Bradysia coprophila: 119076250
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Entry
119076250 CDS
T08269
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119076250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcoo03019
]
119076250
03041 Spliceosome [BR:
bcoo03041
]
119076250
03009 Ribosome biogenesis [BR:
bcoo03009
]
119076250
03016 Transfer RNA biogenesis [BR:
bcoo03016
]
119076250
Enzymes [BR:
bcoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119076250
Messenger RNA biogenesis [BR:
bcoo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119076250
Spliceosome [BR:
bcoo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119076250
Complex C
U4/U6.U5 tri-SnRNP related factors
119076250
Ribosome biogenesis [BR:
bcoo03009
]
Eukaryotic type
Pre-60S particles
Helicases
119076250
Transfer RNA biogenesis [BR:
bcoo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119076250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
119076250
NCBI-ProteinID:
XP_037038811
LinkDB
All DBs
Position
Unknown
AA seq
1010 aa
AA seq
DB search
MDDLFGEFDVQEDAKVTNQPVISSVPTVEKRALENEDDVSFSAKKTKMESILDDINLEDV
ESRIMVHVIESPDACTHEVAVYPGQEYIPLKPATAPPAKEYPFVLDSFQKEAILCIENNQ
SVLVSAHTSAGKTVVAEYAVARSLTSKQRVIYTTPIKALSNQKYREFSEEFKDVGLVTGD
ATINPTASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPD
NVHYVFLSATIPNARQFCEWVCFIHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLVVDEK
GNFKEDNFNTAMNVLLSAGDAAKGDQRGRKGGMSQNASQTNIFKIVKMVMEKNFAPVIIF
SFSKKECEAYAMQMAKLDFNTLDEKKLVDEVFNNAMEVLSEEDRQLPQVENVLPLLRRGI
GIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTSPRKFDGKETRWI
TSGEYIQMSGRAGRRGLDDKGIVILMIDEKVSKAVGKDIVQGKPDPINSAFHLTYNMVLN
LLRVEEINPEYMLERSFFQFQNQSSIPILYKETQEKQKEFDEIHIPNEENIASYYQIREQ
LDNLGKQFRTFITTPTYLVPFLQPGRLIKIQNTNNEEFDWGMVVNFKKQSVPTGKNPLEA
ESSVSIDVLLHLDEDSFEKSVSKPCLPNKKGVVEVVPVVHTFISKISSLRILCPADLRPK
DSRRRVLGIIAEVKKRFENEKLPLLNPITDMNIKDAGFKNIVDLIDQFEKKLFSHPLHES
PQLDGLYSEYCQKLQVENELKMRKDSLRKAKSLLQMDELKYRKRVLRRLGYCTSTDVIEF
KGRVACELSSGDELLITEMIFNGVFNNLSSAQCVSLLSCFVCTEKSSEAPASAEELSGPL
RQMQDLARRIAKVSVECKLTVDEEQYVEKFKPFMMDVCLAWCKGSSFSNICKMTDIYEGS
IIRCMRLLEELLRQMCQAAKTIGNTDLENKFSEGIRLLKRDIVFAASLYL
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggatgatctgttcggagaatttgacgtccaagaggatgcgaaagtgaccaatcaaccc
gtcatttcgtcagtgccgacggtggaaaagcgtgcactggaaaatgaagacgatgtgtca
ttttcggccaagaaaaccaaaatggaatcaattttggacgatattaacctggaagatgta
gagtctcgaataatggttcatgtcattgagagtccggatgcgtgcacacatgaagtcgct
gtttatcccggccaggaatacatccctctgaaaccggcaacagcaccaccagccaaagaa
tatccgttcgttctggattcatttcagaaagaagcaatcctttgcatcgaaaacaatcag
tctgtgctggtgtcggcacatacatcagccggcaaaactgtggttgctgaatatgctgtg
gctcgttcactgactagcaaacagcgtgttatctacactacacccatcaaagccctgtcc
aatcaaaaatatcgtgaatttagcgaagagtttaaagatgttggtctagtgacgggcgat
gctactatcaatccaaccgcatcatgtttgattatgacaactgaaattctacgaaacatg
ctctatcggggttcggaaataatgcgagaagtcggctgggtcgttttcgacgaaattcac
tacatgcgtgacaaggagcgtggtgtcgtatgggaagaaacattgatccttctaccagac
aacgttcactatgtgttcctgtctgcaacaattccgaacgctcgtcaattctgcgaatgg
gtttgttttatacacaaacagccgtgtcatgttgtctacacagactatcgtccgacaccg
ttgcaacactacatattccctgccggaggtgacgggatacatttggtggtcgatgaaaag
gggaatttcaaggaagataattttaatacggccatgaacgtgctgctgagtgctggcgac
gcagccaaaggcgatcaaaggggtcgaaaaggtggcatgagccaaaatgccagtcaaacg
aatattttcaaaattgtcaagatggtcatggagaagaatttcgcgccggtcatcatattc
tcgttcagcaaaaaggaatgcgaagcatacgcaatgcaaatggccaaattggatttcaac
acgctagatgagaaaaagctagtggacgaagtgtttaacaatgccatggaagtcttatcg
gaggaagatagacagctgccgcaagtggaaaacgttttgcctctactgagacgaggcatt
ggaatccatcacggtggactgttgccaattttgaaggagactattgagattctgttcggt
gaaggattaatcaaagctctctttgcaaccgaaacatttgccatgggtctgaacatgccg
gcaagaacggtgttattcacaagtccccgcaaattcgatggaaaagaaacacgatggatt
acttccggcgaatatattcaaatgtctggtcgagcgggtcgacgtggtctcgacgacaag
ggtatcgtaattctgatgatcgatgaaaaagtgtcgaaagcggtcggaaaagacatagta
caaggaaaaccggatccaattaattctgctttccatttgacatacaacatggtcctcaat
ctactacgcgttgaagaaatcaatcccgagtacatgctggaacggtcattcttccaattt
caaaatcagtcctccataccaatactgtataaggaaacgcaggagaagcaaaaggaattc
gacgaaattcacataccaaatgaggagaacattgcgtcgtattatcagatccgcgaacaa
ctagacaatttgggcaaacaatttcgaacgttcattacgaccccaacctatttggttcca
ttcctacagcccggccgattgattaaaatccagaacactaacaacgaagagttcgattgg
ggcatggtggttaatttcaaaaagcaatccgttccgacgggtaagaatccgctagaagca
gaatcaagtgtcagcatcgacgtgctgctacatttggatgaagacagtttcgagaaatca
gtttcgaagccatgtttaccgaacaaaaagggtgtcgttgaagtggttccagtggttcat
acattcatatcgaaaatttcttctctacggatattgtgcccggctgatctgcgaccaaaa
gacagtcgacgacgcgttctgggtatcatagctgaagtaaaaaaacgtttcgaaaatgaa
aaactgccattgctgaaccccatcaccgatatgaacattaaggatgcaggattcaaaaac
attgttgatctgatcgatcaattcgagaagaaattgttctcgcatccattgcacgagtca
ccgcagctagacgggctgtactctgaatactgtcaaaagttgcaggtggaaaatgagtta
aaaatgcgaaaagattcgctgcgtaaggcgaaaagtttgctgcaaatggacgaattgaaa
tatcggaaacgagttctgcgacgattgggatattgtacatcaaccgatgtaattgagttc
aagggtcgtgtggcttgtgaattgagctcgggcgatgaactcctaatcaccgaaatgatc
ttcaacggcgtattcaataatttgtcgtctgcacagtgtgtatcgctactctcatgtttc
gtatgcaccgaaaagagttcagaagctccagcatcagctgaagaactttccggtccactg
cgtcaaatgcaagacttagctcgcagaatagccaaagtgtcagtcgaatgtaaattaacc
gttgacgaggagcaatacgtggagaaattcaaaccattcatgatggacgtgtgcctagct
tggtgtaagggttcatcattttcgaatatttgcaaaatgacagacatctacgaaggttcg
atcattcgctgcatgcgactgttggaagagcttctacggcaaatgtgtcaggcggcaaag
acgatcggaaacacagatttggaaaataaattttccgaaggcattcggctactgaagaga
gacatagtttttgcagcaagtttgtatttgtag
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