Bradysia coprophila: 119077072
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Entry
119077072 CDS
T08269
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
bcoo
Bradysia coprophila
Pathway
bcoo04512
ECM-receptor interaction
bcoo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119077072
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119077072
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bcoo04147
]
119077072
00536 Glycosaminoglycan binding proteins [BR:
bcoo00536
]
119077072
Exosome [BR:
bcoo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119077072
Glycosaminoglycan binding proteins [BR:
bcoo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119077072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119077072
NCBI-ProteinID:
XP_037040110
LinkDB
All DBs
Position
Unknown
AA seq
1788 aa
AA seq
DB search
MRTPFKRLTAVAILLLCTIEARAQFWNDANSGGVGLFNRPDNYRDTEENNFKVDSSYDII
DSNSARRSGEPQRNCSGSNWCIPKCFAEKGSRGLPGLTGLTGQKGVQGFPGGEGLPGPKG
SKGEPGLVGPRGYKGDIGQIGKPGFPGVAGVPGHQGNTGPPGIAGVDGCNGTDGNPGVSG
FDGNPGPRGLPGALGEKGEKGEPARLPDNYLKGQKGEPGFEGRPGERGQPGQSGPRGPTG
NEGRPGVPGLRGETGVKGEKGVSCVFVSGPPGEPGDKGDKGDKGTSNIGYATTSPTNNAG
PRGDRGEHGEKGDMGPKGDSGYIGQKGQYGDIGPKGEKGLSGPPGPRGRDGNYGPIGPSG
QKGDRGVEGLRGLDGKPGLKGEPGQPGRYGAQGLQGPPGPPGGGHGTPGPAGPKGPRGFR
GPPGPKGLDGFNGDVGPRGPVGMKGGQGIPGKPGPEGLSGEKGQKGAYGQIGLPGPMGPR
GLVGQTGPEGPRGDTGLPGIGLPGPRGDDGMPGLPGMKGQKGERGFKGVIGVPGDSRDGR
PGMPGRPGPVGERGEAGRPGLPGMKGDIGEKGDIGGRCSDCRPGIKGDKGDAGLDGLHGA
MGPPGIPGERGYPGETGADGLNGLPGPVGEPGKDGVPGRPGLEGPRGESAFIALDQIEAI
KGDKGERGETGRIGPKGDEGQRGAPGFDGPKGTTGLKGDAGRPGQPGIDGAPGRPGLDGF
PGQKGLSIKGEPGVPGRDGDRGQKGESGFEGQKGEQGQCPPTNIAAGFKGSKGDQGQKGD
QGPQGYTGSPGEKGLQGLVGEKGQTGPVGPAGPVGPRGLPGPRGEKGNQGPMGFVGNPGK
NGLRGVPGRPGAPGIKGEQGISMVGPTGPKGNTGFPGLKGDRGATGERGLDGLPGAVGYP
GEKGDTGFAGNPGQPGLHGEKGDLGPKGPAGLSGPPGRPGMDGVRGLPGEKGEAGATGMI
GMPGVKGERGEPGVDGAKGYQGHKGLSGLRGPPGQAGPSGLRGEKGERGLPGLDGPPGVD
GPLGHPGVSGLKGDIGPPGPAGLDGLPGRNAEKGERGLPGPVGPKGEAGNVSEKGQKGEP
GVPGLRGADGLDGLPGPLGPKGDAGIPGYGRQGPIGQKGEPGIDGRDGLMGLQGEKGDRG
STGLRGLKGDKGQVGRPGTPGQPGMDGARGVDGPPGLRGFDGAPGLKGERGMVGLEGLKG
DQGPAGRYGLQGPAGPKGDRGFTGEPGTPGPLIEIKGQKGEPGVFGLVGLTGEPGLVGPR
GEPGLDGIKGNQGLSGPRGLPGMNGLPGPKGDRGLPGDVGETGPVVKGEKGLPGRPGKHG
RNGPMGLIGLKGDKGLPGLSGETGLRGLPGPQGRQGEKGDRGLTGAPGFDGADGRPGAPG
PVGERGFQGERGEPGPAGYEGQKGERGLSGLPGPAGLNGQPGPKGNVGQPGFDGPPGPIG
LIGEKGNPGLRGRDGRDGFSGEKGDKGEPGLVSPPGPPGLPGQPGRDGIKGDRGLPGPPG
VEGPPGLRGETGLTGLRGLEGQRGSPGLRGEIGFQGTPGLDGQPGQPGPKGDQGLPCTQA
PDYLTGILLVKHSQSEEVPRCEAGHIKLWDGYSLLYVDGNDYPHNQDLGSPGSCVRRFST
QPVLVCSQNNVCNYASRNDRSFWLSTSAAIPMMPVQEEEIRQHISRCVVCEVPSNVIAVH
SQSNAIPDCPRGWDSLWIGYSFLMHVAVGNGGGGQALSGPGSCLEDFRATPFIECNGDKG
HCHYYDTQTSFWLVTLDDSQQFSRPEQQTLKSGNLLTRVSRCQVCIRN
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaccccattcaaacgattgacggcagtcgctatattattactatgtacaatagaa
gctagagcgcaattttggaatgacgcgaacagtggtggtgtaggattatttaaccgaccg
gacaattacagagacaccgaggaaaacaattttaaagtagacagttcgtacgatataatc
gactcaaatagcgcaagacgtagcggtgagccacaaagaaactgcagtggatcgaattgg
tgcattccgaaatgttttgctgaaaaaggaagtcgaggtctacctggtttaactggttta
acaggtcaaaagggtgtacaaggcttccctggcggagaaggattgcctggtccgaaagga
agcaaaggtgaacccggattagtcggaccaagaggttataagggagacattggtcaaatc
ggcaaaccaggctttccaggagttgctggagttcctggacatcaaggaaatactgggcct
ccgggtattgctggtgtcgatggatgtaatggaactgatggaaatcctggtgtttctggt
ttcgatggaaatcctggaccccgcggtcttcctggagcgttaggtgaaaagggagaaaag
ggtgaacctgctcgattacccgataattatctaaagggacaaaaaggtgaaccaggtttc
gagggaagacctggagaacgtggtcagccgggacaaagtggacctagaggaccaactggt
aatgaaggcaggcctggtgttcccggacttcgtggtgaaactggagtcaaaggtgaaaag
ggtgtctcttgtgtatttgtttcgggacctcctggtgagcctggtgataaaggtgacaaa
ggcgataaaggaacatcaaatattgggtatgcaacaaccagtcccacaaacaatgccggc
ccacgaggcgatagaggtgaacacggcgagaaaggtgatatgggaccgaagggtgatagt
ggatacattggacaaaagggtcaatatggtgacataggacctaaaggtgaaaaaggattg
tctggaccacctggccctagaggtcgtgatggaaactacggacctattggaccttcggga
caaaaaggtgatcgcggtgtcgaaggattacgtggtctcgacggaaagccaggtctaaag
ggtgaacccggtcagcccggcagatatggtgcacaaggtttacaaggacctcctggacca
ccaggtggtgggcatggaacacctggaccagctggacctaaaggaccgagaggttttcgt
ggaccgccaggaccgaaaggattagatggctttaatggagatgttggacctcgagggcct
gttggtatgaaaggaggacaaggtattcctggaaagcctggtccagaaggtctgtctggt
gaaaaaggacaaaaaggagcgtacggacaaatcggtttgccaggtccaatgggtccaaga
ggtttggttggacagacaggacctgaaggaccacgaggtgacacaggacttccaggaatc
ggtttaccgggtccacgtggtgacgatggcatgcctggattaccaggaatgaaaggacaa
aaaggagaacgaggattcaaaggtgttattggtgttcctggcgattcaagagatggaaga
ccaggtatgccaggtagacctggtccagttggtgaaagaggagaagcaggtcgtccagga
ttgccaggaatgaagggagacattggtgagaagggtgacattggcggtcgctgttccgat
tgcagaccaggtattaaaggtgacaagggtgatgctggtttagatggtctacacggtgca
atgggacctccaggaattccaggtgaacgaggttatcctggagaaacaggtgctgatggt
ttgaatggtttgccgggtccagttggtgaacctggcaaagatggcgtgcctggaagacct
ggtcttgaaggaccgagaggtgaaagtgcatttattgctttggatcaaatagaagcaatc
aaaggcgataagggagaacgtggtgaaactggaagaatcggcccgaaaggagatgaagga
cagcgcggagcaccaggtttcgatggaccaaaaggaacgacaggattaaagggtgacgca
ggaaggccaggacaaccaggaattgacggtgcacctggaagacccggattagatggattc
cctggacagaaaggtttaagcattaaaggtgaacctggtgttcctggacgagatggtgat
cgaggacagaagggtgaatctggatttgaaggccaaaaaggtgaacaaggtcagtgccca
ccaacgaatatagcagctggattcaaaggcagcaaaggtgatcaaggccaaaaaggagat
cagggaccgcaaggttacactggaagtcctggtgagaaaggtttacaaggattggttgga
gagaaaggacagactgggcctgttggacctgctggaccagttggccctagaggattgccg
ggaccgagaggagagaaaggaaatcaaggtccgatgggctttgtgggcaatcctggcaaa
aatggactacgaggtgttcctggaagacccggcgcaccaggcattaaaggagaacaagga
atttcaatggttggacctactggaccgaaaggtaacactggattccctggcctaaaaggt
gaccgaggtgcaactggtgaaagaggtcttgacggtttacctggtgctgtcggttatcct
ggagaaaaaggtgatacaggatttgctggtaatcccggccagcctggtttgcatggagaa
aagggtgatcttggacctaaaggacctgctggtttgtccggtccgcctggaagacctgga
atggatggagtgagaggtttgcccggcgagaaaggagaagcaggagcgactggaatgatt
ggtatgccaggtgtaaaaggtgaacgtggagagcctggtgttgatggtgctaaaggttac
caaggtcacaaaggtttgtcaggtttacgaggaccacctggacaagcaggtccaagtgga
ttacgaggtgaaaagggtgaaagaggtttgccaggattggatggtccacctggtgttgat
ggtccattaggtcatccaggtgtatcaggactgaaaggtgatattggcccaccaggacca
gctggtttggatggcttgcctggacgaaatgcagaaaaaggtgaaagaggattgcctgga
ccagtcggacctaaaggagaagctggaaatgtatctgaaaaaggacagaaaggtgaacct
ggtgttccaggattaagaggagccgatggtttagatggattacctggaccgcttgggccg
aaaggtgatgctggtattcctggctatggacgtcaaggtccaattggacaaaaaggtgaa
cctggtatcgatggaagagatggtttgatgggattacagggtgaaaaaggagaccgcggt
agtactggattgagaggactaaaaggtgataagggacaagttggaagaccaggaactcca
ggacagccaggtatggatggtgcacgaggcgttgatggtccacctggattgcgtggtttt
gatggtgcacctggactaaagggagaaaggggaatggttggtcttgaaggattgaaaggc
gaccaaggtccagctggaagatatggtttgcaaggtccagcaggaccaaaaggtgatcgc
ggttttactggtgaacctggcacaccgggacctttgattgaaattaaaggacaaaaaggt
gagcctggagtgtttggacttgtgggacttaccggcgaaccaggtttagttggtccgcgt
ggtgaacctggtctagatggtatcaagggaaatcaaggattaagtggtccacgtggatta
cctggaatgaatggattaccaggaccaaaaggagatcgtggattgcctggcgatgttggt
gagacgggtccagttgttaaaggtgaaaaaggtttgcctggacgacccggaaagcatgga
cgaaatggaccgatgggattgattggattgaagggagacaagggtttgccaggattgtct
ggtgaaacaggtctgcgcggtcttccaggtccacaaggtcgacaaggtgaaaagggagat
cgtggattaactggtgctcctggattcgatggagccgatggtagacctggagctcctgga
ccagtgggtgaaagaggtttccaaggtgaacgtggtgaacctggaccagcgggctatgaa
ggacaaaagggagaacgtggtctttctggtttacctggaccagcaggtttgaacggacaa
ccgggacctaaaggtaatgtcggacaacctggattcgatggtccacctggaccaattggt
ttgatcggagaaaagggcaatcctggtcttcgtggtcgagacggtagagatggtttctca
ggagaaaagggtgacaaaggagaacccggattagtttcaccacctggaccaccaggtttg
cctggacaacctggacgcgatggtataaagggagatcgtggtttgccgggaccacctgga
gttgagggtccacctggtttacgcggagaaactggattaacaggtttaagaggtcttgaa
ggacaaagaggatcgccaggtctacgaggagaaattggtttccaaggaacccctggtctc
gatggacagcctggacaaccgggaccgaaaggagatcaaggtttaccttgcactcaagct
cctgattatcttacgggcattttgctagtcaaacatagtcaatcggaagaagttcccaga
tgcgaagccggtcacattaaattatgggatggttactcattgctgtacgtcgatggaaac
gactatccacacaatcaagatttaggttcacccggatcctgtgtacgaagattctccaca
caacctgtactggtctgtagccaaaataatgtatgcaactatgcatcacgaaacgatcga
tcattctggctgtccacatcagccgctattccaatgatgcctgttcaagaagaggagatc
cgacaacacatttccagatgtgttgtatgcgaagtaccatcaaacgtaattgccgtacac
agtcagtcgaatgcaattccagactgtccacgaggctgggactcactatggatcggttac
agtttcttaatgcacgttgctgtcggtaatggtggtggtggacaagcactatccggacca
ggttcatgtctcgaagacttccgtgcaacgccatttattgaatgtaatggtgacaaagga
cattgtcattactatgacacgcagactagtttctggttggtgacactagacgattcacaa
cagttctccagacccgaacaacaaacactaaaatcgggcaatttattaactagagtatca
cggtgccaagtttgtataagaaattaa
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integrated database retrieval system
