Bradysia coprophila: 119077072
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Entry
119077072 CDS
T08269
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
bcoo
Bradysia coprophila
Pathway
bcoo04382
Cornified envelope formation
bcoo04512
ECM-receptor interaction
bcoo04518
Integrin signaling
bcoo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119077072
04518 Integrin signaling
119077072
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119077072
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119077072
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bcoo04147
]
119077072
00536 Glycosaminoglycan binding proteins [BR:
bcoo00536
]
119077072
Exosome [BR:
bcoo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119077072
Glycosaminoglycan binding proteins [BR:
bcoo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119077072
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119077072
NCBI-ProteinID:
XP_037040110
LinkDB
All DBs
Position
Unknown
AA seq
1788 aa
AA seq
DB search
MRTPFKRLTAVAILLLCTIEARAQFWNDANSGGVGLFNRPDNYRDTEENNFKVDSSYDII
DSNSARRSGEPQRNCSGSNWCIPKCFAEKGSRGLPGLTGLTGQKGVQGFPGGEGLPGPKG
SKGEPGLVGPRGYKGDIGQIGKPGFPGVAGVPGHQGNTGPPGIAGVDGCNGTDGNPGVSG
FDGNPGPRGLPGALGEKGEKGEPARLPDNYLKGQKGEPGFEGRPGERGQPGQSGPRGPTG
NEGRPGVPGLRGETGVKGEKGVSCVFVSGPPGEPGDKGDKGDKGTSNIGYATTSPTNNAG
PRGDRGEHGEKGDMGPKGDSGYIGQKGQYGDIGPKGEKGLSGPPGPRGRDGNYGPIGPSG
QKGDRGVEGLRGLDGKPGLKGEPGQPGRYGAQGLQGPPGPPGGGHGTPGPAGPKGPRGFR
GPPGPKGLDGFNGDVGPRGPVGMKGGQGIPGKPGPEGLSGEKGQKGAYGQIGLPGPMGPR
GLVGQTGPEGPRGDTGLPGIGLPGPRGDDGMPGLPGMKGQKGERGFKGVIGVPGDSRDGR
PGMPGRPGPVGERGEAGRPGLPGMKGDIGEKGDIGGRCSDCRPGIKGDKGDAGLDGLHGA
MGPPGIPGERGYPGETGADGLNGLPGPVGEPGKDGVPGRPGLEGPRGESAFIALDQIEAI
KGDKGERGETGRIGPKGDEGQRGAPGFDGPKGTTGLKGDAGRPGQPGIDGAPGRPGLDGF
PGQKGLSIKGEPGVPGRDGDRGQKGESGFEGQKGEQGQCPPTNIAAGFKGSKGDQGQKGD
QGPQGYTGSPGEKGLQGLVGEKGQTGPVGPAGPVGPRGLPGPRGEKGNQGPMGFVGNPGK
NGLRGVPGRPGAPGIKGEQGISMVGPTGPKGNTGFPGLKGDRGATGERGLDGLPGAVGYP
GEKGDTGFAGNPGQPGLHGEKGDLGPKGPAGLSGPPGRPGMDGVRGLPGEKGEAGATGMI
GMPGVKGERGEPGVDGAKGYQGHKGLSGLRGPPGQAGPSGLRGEKGERGLPGLDGPPGVD
GPLGHPGVSGLKGDIGPPGPAGLDGLPGRNAEKGERGLPGPVGPKGEAGNVSEKGQKGEP
GVPGLRGADGLDGLPGPLGPKGDAGIPGYGRQGPIGQKGEPGIDGRDGLMGLQGEKGDRG
STGLRGLKGDKGQVGRPGTPGQPGMDGARGVDGPPGLRGFDGAPGLKGERGMVGLEGLKG
DQGPAGRYGLQGPAGPKGDRGFTGEPGTPGPLIEIKGQKGEPGVFGLVGLTGEPGLVGPR
GEPGLDGIKGNQGLSGPRGLPGMNGLPGPKGDRGLPGDVGETGPVVKGEKGLPGRPGKHG
RNGPMGLIGLKGDKGLPGLSGETGLRGLPGPQGRQGEKGDRGLTGAPGFDGADGRPGAPG
PVGERGFQGERGEPGPAGYEGQKGERGLSGLPGPAGLNGQPGPKGNVGQPGFDGPPGPIG
LIGEKGNPGLRGRDGRDGFSGEKGDKGEPGLVSPPGPPGLPGQPGRDGIKGDRGLPGPPG
VEGPPGLRGETGLTGLRGLEGQRGSPGLRGEIGFQGTPGLDGQPGQPGPKGDQGLPCTQA
PDYLTGILLVKHSQSEEVPRCEAGHIKLWDGYSLLYVDGNDYPHNQDLGSPGSCVRRFST
QPVLVCSQNNVCNYASRNDRSFWLSTSAAIPMMPVQEEEIRQHISRCVVCEVPSNVIAVH
SQSNAIPDCPRGWDSLWIGYSFLMHVAVGNGGGGQALSGPGSCLEDFRATPFIECNGDKG
HCHYYDTQTSFWLVTLDDSQQFSRPEQQTLKSGNLLTRVSRCQVCIRN
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaccccattcaaacgattgacggcagtcgctatattattactatgtacaatagaa
gctagagcgcaattttggaatgacgcgaacagtggtggtgtaggattatttaaccgaccg
gacaattacagagacaccgaggaaaacaattttaaagtagacagttcgtacgatataatc
gactcaaatagcgcaagacgtagcggtgagccacaaagaaactgcagtggatcgaattgg
tgcattccgaaatgttttgctgaaaaaggaagtcgaggtctacctggtttaactggttta
acaggtcaaaagggtgtacaaggcttccctggcggagaaggattgcctggtccgaaagga
agcaaaggtgaacccggattagtcggaccaagaggttataagggagacattggtcaaatc
ggcaaaccaggctttccaggagttgctggagttcctggacatcaaggaaatactgggcct
ccgggtattgctggtgtcgatggatgtaatggaactgatggaaatcctggtgtttctggt
ttcgatggaaatcctggaccccgcggtcttcctggagcgttaggtgaaaagggagaaaag
ggtgaacctgctcgattacccgataattatctaaagggacaaaaaggtgaaccaggtttc
gagggaagacctggagaacgtggtcagccgggacaaagtggacctagaggaccaactggt
aatgaaggcaggcctggtgttcccggacttcgtggtgaaactggagtcaaaggtgaaaag
ggtgtctcttgtgtatttgtttcgggacctcctggtgagcctggtgataaaggtgacaaa
ggcgataaaggaacatcaaatattgggtatgcaacaaccagtcccacaaacaatgccggc
ccacgaggcgatagaggtgaacacggcgagaaaggtgatatgggaccgaagggtgatagt
ggatacattggacaaaagggtcaatatggtgacataggacctaaaggtgaaaaaggattg
tctggaccacctggccctagaggtcgtgatggaaactacggacctattggaccttcggga
caaaaaggtgatcgcggtgtcgaaggattacgtggtctcgacggaaagccaggtctaaag
ggtgaacccggtcagcccggcagatatggtgcacaaggtttacaaggacctcctggacca
ccaggtggtgggcatggaacacctggaccagctggacctaaaggaccgagaggttttcgt
ggaccgccaggaccgaaaggattagatggctttaatggagatgttggacctcgagggcct
gttggtatgaaaggaggacaaggtattcctggaaagcctggtccagaaggtctgtctggt
gaaaaaggacaaaaaggagcgtacggacaaatcggtttgccaggtccaatgggtccaaga
ggtttggttggacagacaggacctgaaggaccacgaggtgacacaggacttccaggaatc
ggtttaccgggtccacgtggtgacgatggcatgcctggattaccaggaatgaaaggacaa
aaaggagaacgaggattcaaaggtgttattggtgttcctggcgattcaagagatggaaga
ccaggtatgccaggtagacctggtccagttggtgaaagaggagaagcaggtcgtccagga
ttgccaggaatgaagggagacattggtgagaagggtgacattggcggtcgctgttccgat
tgcagaccaggtattaaaggtgacaagggtgatgctggtttagatggtctacacggtgca
atgggacctccaggaattccaggtgaacgaggttatcctggagaaacaggtgctgatggt
ttgaatggtttgccgggtccagttggtgaacctggcaaagatggcgtgcctggaagacct
ggtcttgaaggaccgagaggtgaaagtgcatttattgctttggatcaaatagaagcaatc
aaaggcgataagggagaacgtggtgaaactggaagaatcggcccgaaaggagatgaagga
cagcgcggagcaccaggtttcgatggaccaaaaggaacgacaggattaaagggtgacgca
ggaaggccaggacaaccaggaattgacggtgcacctggaagacccggattagatggattc
cctggacagaaaggtttaagcattaaaggtgaacctggtgttcctggacgagatggtgat
cgaggacagaagggtgaatctggatttgaaggccaaaaaggtgaacaaggtcagtgccca
ccaacgaatatagcagctggattcaaaggcagcaaaggtgatcaaggccaaaaaggagat
cagggaccgcaaggttacactggaagtcctggtgagaaaggtttacaaggattggttgga
gagaaaggacagactgggcctgttggacctgctggaccagttggccctagaggattgccg
ggaccgagaggagagaaaggaaatcaaggtccgatgggctttgtgggcaatcctggcaaa
aatggactacgaggtgttcctggaagacccggcgcaccaggcattaaaggagaacaagga
atttcaatggttggacctactggaccgaaaggtaacactggattccctggcctaaaaggt
gaccgaggtgcaactggtgaaagaggtcttgacggtttacctggtgctgtcggttatcct
ggagaaaaaggtgatacaggatttgctggtaatcccggccagcctggtttgcatggagaa
aagggtgatcttggacctaaaggacctgctggtttgtccggtccgcctggaagacctgga
atggatggagtgagaggtttgcccggcgagaaaggagaagcaggagcgactggaatgatt
ggtatgccaggtgtaaaaggtgaacgtggagagcctggtgttgatggtgctaaaggttac
caaggtcacaaaggtttgtcaggtttacgaggaccacctggacaagcaggtccaagtgga
ttacgaggtgaaaagggtgaaagaggtttgccaggattggatggtccacctggtgttgat
ggtccattaggtcatccaggtgtatcaggactgaaaggtgatattggcccaccaggacca
gctggtttggatggcttgcctggacgaaatgcagaaaaaggtgaaagaggattgcctgga
ccagtcggacctaaaggagaagctggaaatgtatctgaaaaaggacagaaaggtgaacct
ggtgttccaggattaagaggagccgatggtttagatggattacctggaccgcttgggccg
aaaggtgatgctggtattcctggctatggacgtcaaggtccaattggacaaaaaggtgaa
cctggtatcgatggaagagatggtttgatgggattacagggtgaaaaaggagaccgcggt
agtactggattgagaggactaaaaggtgataagggacaagttggaagaccaggaactcca
ggacagccaggtatggatggtgcacgaggcgttgatggtccacctggattgcgtggtttt
gatggtgcacctggactaaagggagaaaggggaatggttggtcttgaaggattgaaaggc
gaccaaggtccagctggaagatatggtttgcaaggtccagcaggaccaaaaggtgatcgc
ggttttactggtgaacctggcacaccgggacctttgattgaaattaaaggacaaaaaggt
gagcctggagtgtttggacttgtgggacttaccggcgaaccaggtttagttggtccgcgt
ggtgaacctggtctagatggtatcaagggaaatcaaggattaagtggtccacgtggatta
cctggaatgaatggattaccaggaccaaaaggagatcgtggattgcctggcgatgttggt
gagacgggtccagttgttaaaggtgaaaaaggtttgcctggacgacccggaaagcatgga
cgaaatggaccgatgggattgattggattgaagggagacaagggtttgccaggattgtct
ggtgaaacaggtctgcgcggtcttccaggtccacaaggtcgacaaggtgaaaagggagat
cgtggattaactggtgctcctggattcgatggagccgatggtagacctggagctcctgga
ccagtgggtgaaagaggtttccaaggtgaacgtggtgaacctggaccagcgggctatgaa
ggacaaaagggagaacgtggtctttctggtttacctggaccagcaggtttgaacggacaa
ccgggacctaaaggtaatgtcggacaacctggattcgatggtccacctggaccaattggt
ttgatcggagaaaagggcaatcctggtcttcgtggtcgagacggtagagatggtttctca
ggagaaaagggtgacaaaggagaacccggattagtttcaccacctggaccaccaggtttg
cctggacaacctggacgcgatggtataaagggagatcgtggtttgccgggaccacctgga
gttgagggtccacctggtttacgcggagaaactggattaacaggtttaagaggtcttgaa
ggacaaagaggatcgccaggtctacgaggagaaattggtttccaaggaacccctggtctc
gatggacagcctggacaaccgggaccgaaaggagatcaaggtttaccttgcactcaagct
cctgattatcttacgggcattttgctagtcaaacatagtcaatcggaagaagttcccaga
tgcgaagccggtcacattaaattatgggatggttactcattgctgtacgtcgatggaaac
gactatccacacaatcaagatttaggttcacccggatcctgtgtacgaagattctccaca
caacctgtactggtctgtagccaaaataatgtatgcaactatgcatcacgaaacgatcga
tcattctggctgtccacatcagccgctattccaatgatgcctgttcaagaagaggagatc
cgacaacacatttccagatgtgttgtatgcgaagtaccatcaaacgtaattgccgtacac
agtcagtcgaatgcaattccagactgtccacgaggctgggactcactatggatcggttac
agtttcttaatgcacgttgctgtcggtaatggtggtggtggacaagcactatccggacca
ggttcatgtctcgaagacttccgtgcaacgccatttattgaatgtaatggtgacaaagga
cattgtcattactatgacacgcagactagtttctggttggtgacactagacgattcacaa
cagttctccagacccgaacaacaaacactaaaatcgggcaatttattaactagagtatca
cggtgccaagtttgtataagaaattaa
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integrated database retrieval system
