Bradysia coprophila: 119078236
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Entry
119078236 CDS
T08269
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119078236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bcoo03041
]
119078236
03009 Ribosome biogenesis [BR:
bcoo03009
]
119078236
Enzymes [BR:
bcoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119078236
Spliceosome [BR:
bcoo03041
]
Complex A
U2 snRNP components
U2 related factors
119078236
Complex B
119078236
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
119078236
Ribosome biogenesis [BR:
bcoo03009
]
Eukaryotic type
90S particles
Helicases
119078236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
Flavi_DEAD
Myosin_head
ABC_tran
ATPase
AAA_30
AAA_25
Microtub_bd
TsaE
T2SSE
Motif
Other DBs
NCBI-GeneID:
119078236
NCBI-ProteinID:
XP_037041589
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MSKRRIEIMDPFIKKRREEKGVPVDCSAASSSNAPVTIAPHTPNNQTTRVNTVNPYNGQV
YSQKFHSIYQKRIMLPVFEYQSDFMRLLAENQCIVLVGETGSGKTTQIPQWCVEYASSVG
SKGVSCTQPRRVAAMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPKTLLKYMTDGMLLRE
AMSDPMLEAYQVILLDEAHERTLATDILMGVLKEVVRQRSDLKLVVMSATLDAGKFQQYF
DNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEDIEGDILMFLTGQEEIEE
ACKRIKREIDNLGASVGELKCIPLYSTLPPNLQQRIFEPPPPNKPNGAIGRKVVVSTNIA
ETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTKPGKCFRL
YTEKAYKNEMQDNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLN
YLAALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPN
DVKKAADEAKMRFAHIDGDHLTLLNVYHAFKQSGEDKNWCYENFVNHRSLKQADDVRTQL
SRIMDRFNLKRTSTDFTSKDYYINIRKALVQGFFMQVAHCERTGHYLTIKDNQVVQLHPS
TCLDHKPEWVLYNEFVLTTKNYIRTVTDCKPEWLLKIAPQYYDMNNFPQCEAKRQLEMMQ
ARMDSKQYQQGF
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgaagaattgaaattatggatccattcatcaagaagaggcgagaggaaaaa
ggagtaccggtagactgttcagcggcatcgtcctcaaatgctccagtaaccatagcacca
cacactccgaacaatcagaccacccgagtgaacacagttaatccgtacaatggtcaagtg
tattcgcaaaaattccactcgatctaccagaaacgtatcatgttgccggtgttcgagtat
cagtcggatttcatgcgtctgttggccgaaaatcagtgcattgtactcgtcggcgagacg
ggaagtggtaaaacaacacaaataccgcagtggtgtgtggagtatgcttcgtccgttgga
agcaagggagtctcatgtactcaaccacgtcgagtcgctgctatgtcggtagcacaacgt
gtttccgaagaaatggacgtggcgttgggacaggaggttggctacagtattcgtttcgag
gattgttcgtccccgaaaacccttttaaaatacatgaccgatggtatgttgttgcgagaa
gcaatgagcgatccgatgttagaagcataccaagttatacttctcgacgaagcgcacgaa
cgtacgctggccacggatattttgatgggcgttttaaaggaagtggtcaggcaacgcagc
gatttgaaattagttgtgatgtcggctacactcgatgccggcaaatttcaacaatatttc
gacaatgcaccgctgatgaatgttccgggacgaacgcatccagtggaaatattctataca
cccgaaccggagcgcgattatcttgaagcggcaattcgtacggtcattcagattcacatg
tgcgaggacatcgaaggcgacatattgatgtttttgaccgggcaagaggaaatcgaagaa
gcgtgcaagcgaatcaaacgagaaatcgacaatctgggcgctagtgtcggtgaactgaaa
tgcattccgttgtattcgacgttgccaccaaatttacagcaacgcattttcgaaccgcca
ccgcccaataaaccgaatggagccattggccggaaagtggttgtgtcgacaaatattgca
gaaacatcactcacaatcgacggtgtggtgttcgtaattgaccccggctttgccaagcag
aaagtttacaatccccgaattcgcgtcgaaagtttattagtttcgccgatcagtaaagca
tcggctcagcaacgggctggacgagctggtcgaacgaaacccggaaaatgtttccgattg
tacacggaaaaggcttacaaaaatgagatgcaagacaacacgtatccggaaattctacgg
tctaatttgggaacggttgttcttcagctgaaaaaactcggcatcgacgatttggtacat
tttgatttcatggatccaccggcaccggaaacgctgatgagagcgttggaactgttaaac
tatttggctgccttggacgacgatggaaatttgaccgatttgggtgcagttatggcagaa
tttcccttggatccgcaacttgccaaaatgttgattgccagctgtaaccataattgttcc
aacgaaattttatccattactgctatgttgtcggtaccacagtgctttgtccggccaaat
gacgttaagaaggcagctgacgaggcgaaaatgcgttttgcacacatcgatggtgatcat
ctcaccctgcttaatgtttaccatgcattcaaacaaagtggcgaagacaaaaactggtgt
tacgaaaattttgtgaatcacagatcgttgaaacaagccgatgatgtgagaacacaattg
tcacggattatggacagatttaatttgaaaagaactagcacagatttcacatcgaaagac
tactacatcaacattagaaaggcgttagttcaaggatttttcatgcaagtggcccattgt
gaacgcactggacattatctaacaataaaagacaaccaggtcgtacagttgcatccatct
acatgtttggaccacaagcccgaatgggtgttgtataatgagtttgtcttaacaacaaag
aattacattcgcaccgttaccgactgtaaacctgaatggttgctgaaaattgccccacaa
tactatgacatgaacaatttcccgcagtgtgaggcgaaacgacagttggaaatgatgcaa
gcacggatggattcgaaacaatatcaacaaggattttaa
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integrated database retrieval system
