Bradysia coprophila: 119078281
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Entry
119078281 CDS
T08269
Name
(RefSeq) uncharacterized protein LOC119078281
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119078281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcoo03021
]
119078281
03019 Messenger RNA biogenesis [BR:
bcoo03019
]
119078281
Transcription machinery [BR:
bcoo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119078281
Messenger RNA biogenesis [BR:
bcoo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119078281
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
Pcf11_helical
zf_PCFS4
VHS
Pfc11_Clp1_ID
CTK3
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
119078281
NCBI-ProteinID:
XP_037041667
LinkDB
All DBs
Position
Unknown
AA seq
1655 aa
AA seq
DB search
MTDPLDIEKEYLSSLSDLNWNSKPLILMLTDVAAENIDHAQVIVDAIIKHINKTPPEMKL
PVLYLIDSIVKNLGKKYDGRYLDLFSRSIVNIFCDVFQEVNEKVRAKMFALRQTWNNEFS
QSKLYALDIKTNALDPGWPITAKFTPSIHVNPNFFKSKTSDSDILREKERELLELQKRKL
ELELAATKKHIAEQEKQLQTKTALVPTVSTNVPHPHNRSQPVTAESSGNNFTNTNYQYQS
IDMIQPKAVNAESAPQNVRPRDPRLARQMQFQNSAQRNVNQRNRTASPVFANQGFGSASI
HFVPNSQVDNAIAHRPAAAFNAAIMDDSSRKSRTASKNRSSSKEVKTRSTSKTSPKSQKP
NSQKSSPKSPASSSSRSSSRSSKSSPSSNHQSPKDQKKNRNKETESKSVAIAALAEAERI
KEFTIPKKRSPSPKDKSITDPKVSSTTKTADSPTKVIKASKSNSKSRNNARHTRGGGESV
EIVQPETVPSTTSVTAPTIPTTTTSESIESPIPPSIEPVVNVPAKASCVPLPGAGENQSF
KNNVIDVPSKDIDLRLMLSTAGSSPISTTSFGSSLSATPSSVEARKRSEDRSVEEPPEQK
KRKTEKIDGLFGKEDVDLRTQLSQAITPLFPPAVLPSGEEKPDWATIKADTPKSNKSNFD
AVRAKLAEASRHLPNKPNRNNDIDLRRRHIRNYIEDSQDGSDATFKIILAQAQVQLDNDD
MNLEQYNTLMQQVAQAHTKSKKESLKRKNDLVSRSGLSMDNNDHFSSSSSDSNNGKSSRN
AKRDRRDSDGPDNVSSKENRSNRNHKSSRRRTSKWSSRDKSQNAMLNFQQQPSSSRQFNV
QHVWQDEQPMFPPNMMMNNPYMINAIPSNIPCINNQRTINIDGIPREIRFYDEVAIAFMK
ENGGEPKEIGFQSGERRVLVDNKDSIVLAFNDSYKPFKIDGVKYQIRFGSPIRELYINNM
WYECFFGDPPTNITLDGRIRQFKIEGPSPQVRIGNLRTDLVVGKIDLYVDVHVKVSLYLD
AQVQHFELDNQKHTVQFADYFLTVLIDGEQFGVEYGGMPKKIRFGGRDHYIRFSIMPDGV
VPGMMYIKNMLRTERHRGIQSPLPTVYTELIMPLIPSVSNVNVMPEIAAVAPVLPAGSVN
EVPLTSMVPAAPSINIDDLFQKLLASGILNNTTKAETKEKSKEKPKTISLAKPDTLKYRQ
QTHIHVLFSGMQCSSCGVRFPPEQTVKYSQHLDWHFRQNRRDRDSTRRAHSRRWYYNVED
WIQYEEIEDLDERERNWFETQQMEMDMANDDSAQRNESPVPSCVAGPEDVDKTCDMCHDQ
FETFYNEENEEWHLRNAIRVDDRTYHPICFEDCKTSETLDESSINNGLHGDNAVELALKT
ETADESVDRILLDDDDDVIVLPQEEPVITEIVDDDDTPTVSSSIVTVEKIDSTSQDGAST
SGAVTSSTNDDVNATYESIGNESDLQILVPQISVVDVEDFEDKPIDSTIQLPVKIKEEPK
DDGYDEDDAFEDIGTFEEATTIEDNSADGFTPVAIVSTTPNTQPAPSTHQTQASMYTSLD
GHVQLQDAAPATIGMNKIKINITKNVTKTAIKASDSNLGKQSELAATKANVTDKNKEEEE
QEITFEYKDTMKGANFKKLPAVRSGTETSGLCTIM
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgacggatccattggacattgaaaaggagtatctctccagtctgagtgatctcaattgg
aacagtaagccgctaatacttatgctaaccgatgtagcggcagagaatatcgatcatgcc
caagtcatcgtcgatgccatcataaaacatataaataagacacctccagagatgaagctt
cctgttctatatttgatcgattcgatcgtcaaaaatcttggtaaaaaatatgatggacga
taccttgacctgttcagccgatcaatagtgaatatcttttgcgatgtctttcaagaggtg
aacgaaaaagttcgtgcgaagatgtttgcgttacggcagacttggaacaacgaattttca
caatccaaattgtacgcattggatatcaaaaccaatgcacttgatccgggatggccgata
acagccaaattcacaccatccattcacgtgaatccgaactttttcaagagtaaaacgtcc
gatagcgacattctgcgggaaaaggaacgcgaacttttggaattgcagaaacggaaatta
gaattggaattggctgcaacgaagaagcacatagccgaacaagaaaagcagctacaaact
aagaccgctcttgtgccaacggtaagcaccaacgttccacacccacataaccgatctcaa
cctgtaacagctgaatcgtctggcaataacttcacaaacactaattaccaatatcagtca
atcgatatgatccaaccgaaggcagtaaatgcagaatcagctccgcaaaatgtacgccct
cgtgatccccgactcgcccgtcaaatgcaatttcaaaattctgctcaacgtaacgtcaat
caaagaaaccgaacggcttcaccagtatttgccaatcaaggtttcggttccgcttcaatc
catttcgtcccgaatagtcaagtagacaatgcaattgcacacagacctgctgcagcattc
aatgctgcaattatggatgattcaagtagaaaatcgcgaacagcaagcaaaaaccgcagt
tcgtcgaaagaagtgaaaactcgctcgacatcaaaaacgtcaccgaaatcgcaaaaacca
aacagtcaaaagtcgtctcccaaatcaccagcctcgtcttcatccagatcatcgtcgaga
agttcgaaatcatctccatcgagtaaccaccagtcgccgaaagaccagaaaaaaaatcgg
aacaaagagacagagtccaagagtgtcgcaatcgcagctttggctgaagccgaacggatc
aaagaatttacgataccgaaaaagcgcagcccatcgccgaaagataagtcgataacggat
ccgaaagtgtcgagcaccacaaagactgccgacagtccaaccaaggtcatcaaggctagt
aagtcgaattcgaaatcaagaaacaatgcgagacatactcgaggagggggggaaagtgtg
gaaattgttcaaccggagacagtaccatcaacaacatcggtgactgccccgaccatccca
actacaaccacatcagaatccattgaatcaccaattccaccgtccattgaaccagttgtg
aatgttccggcaaaagctagctgcgttccattgccaggggctggcgaaaatcaaagcttt
aaaaacaatgtgattgacgttccatcgaaagacatcgatctaagattaatgctatccact
gcgggatcatcgccgatatcaaccacttcgtttggatcatccctttccgcaactccgtcc
tcggtcgaagcacggaaaaggtccgaagatcgcagcgttgaagagccgcccgagcaaaag
aaacgaaagactgagaagatcgacggattattcggaaaggaagacgtggatttgagaact
cagcttagtcaagcaataactccgttatttccgcctgcagttctcccatccggtgaagag
aaacctgattgggcaaccatcaaggctgacacaccaaaatcgaacaaatcgaatttcgac
gcggttcgagctaaattggctgaagctagtcgacacctgccaaacaaacccaatcggaac
aacgatatcgatctgaggcgacgacacatccgcaattatatcgaagactcacaggatggc
agcgatgcaacgttcaaaatcatattggctcaggcacaggtgcaactggacaacgacgat
atgaatttggaacaatacaacactttgatgcaacaagtggctcaggcgcacacaaagtcg
aagaaagagtcgttgaagcgtaagaatgatttggtcagccgatccggtttgtcaatggac
aacaatgatcatttcagttcgagcagttccgattcgaataatggaaaatcgtcacgtaat
gccaaaagagatcgtcgtgatagtgatggaccagacaatgtgtcgtcaaaggaaaatcgg
agcaatcgaaaccataagagttccagaagacgaacctcgaagtggtcatcccgggacaag
agtcaaaatgcgatgctcaattttcaacaacaacccagttcgtcgcgtcaattcaatgtc
caacatgtatggcaagacgaacagccaatgtttccaccgaatatgatgatgaacaatccg
tacatgataaatgccatcccatcgaatataccctgcattaacaatcaacgaaccatcaac
attgacggcattccacgcgagattcgtttctacgatgaagtggccattgcatttatgaaa
gagaacggtggcgaaccaaaggaaataggttttcaatccggagaacgccgggttctcgtc
gacaacaaggacagcatagtgttggccttcaacgattcctataagccatttaaaattgac
ggtgtcaagtaccagattcgatttggttcaccgatcagggaactgtacattaacaacatg
tggtacgaatgtttcttcggtgatccacccaccaacatcacactggacggcagaattcgt
caatttaaaatcgaaggaccatcgccacaagtgcgaatcggaaatttgcgcactgatctg
gtggttgggaagatagatttgtacgtcgacgttcatgtgaaagtttcgctctatttggat
gcgcaggtgcagcactttgaattggacaatcagaagcacaccgttcagtttgctgactat
ttccttaccgtattgatagacggtgaacagttcggcgtcgaatatggtggtatgccaaag
aaaatcaggtttggcggacgtgatcattatatccgattctccataatgccagatggcgtt
gtcccggggatgatgtacataaaaaatatgctgcgaaccgaacgtcatcgtgggatccag
tcgcctctaccgacagtgtacactgaattaataatgccactcattccgtctgtgagcaat
gtcaatgtcatgccagaaatcgcagctgtggctccagtattaccagctggttcagttaac
gaagttcctttaacgtcaatggttccagctgccccatcgataaacatcgatgatttgttc
cagaaattgttggcgtccggcatcttaaacaacacaaccaaagcggaaacaaaggaaaag
tcaaaggagaaaccgaaaacaatatcgttagccaagcccgataccctgaagtatcgtcaa
cagactcacattcatgtcctgttttctggcatgcaatgtagcagctgtggagttcgtttt
ccgccagaacagaccgttaagtatagtcaacatttagactggcatttccggcagaatcgt
cgcgatcgtgattcgactcgacgggcgcactctcgtcggtggtattacaatgtggaagat
tggattcaatacgaagaaatcgaagacctagacgaacgggaacgcaattggttcgaaacg
caacaaatggaaatggatatggcaaacgatgattcggcccagcgcaatgaatcaccggtg
ccgagttgtgttgcaggaccagaagatgtagataaaacatgtgatatgtgccacgatcaa
ttcgaaacattctacaacgaggaaaatgaggaatggcaccttaggaatgctatccgtgtc
gatgacagaacgtatcatccgatttgttttgaagactgtaagacttcagagacattggac
gagtctagtattaacaatggtcttcacggcgacaatgctgtggagctggccttgaaaacc
gaaacagccgatgagtcagttgatcgaattttgcttgacgatgacgacgatgtcattgtg
ttaccgcaagaggagcctgtcatcaccgaaattgtggacgatgatgatacacccacagtt
tcgtccagcatagtgactgtggagaaaattgattcaacgtcccaagatggtgctagcaca
tccggtgcggtaacatcatcaaccaatgatgacgtgaacgctacgtatgaatcgattgga
aacgaatcggatcttcagatattggtgccacaaatttcggttgttgatgtcgaagatttc
gaggacaaaccgatcgattcgacgatacaattgccggttaagattaaggaagaacccaaa
gatgatggctacgacgaagatgatgcgttcgaagatattggaacgtttgaggaggctacg
accatcgaagataacagtgcggatggctttacacctgtggctatcgtatcaacaacgccg
aatacccagcctgcaccgtcaacgcatcaaacacaagcgtcaatgtacaccagtctggac
ggtcatgttcaattgcaggacgcagcaccggcaacaatcggaatgaataagattaagata
aacataacgaaaaatgtaacgaaaactgcaataaaggctagtgatagtaatttaggtaaa
cagagcgaattagccgcgacgaaagctaatgtaaccgacaagaataaagaggaagaagaa
caagaaattacatttgaatacaaggacacgatgaaaggggcgaattttaagaaattgcca
gccgttcgaagtggcaccgaaacgtctggtttgtgcaccataatgtaa
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integrated database retrieval system
