Bradysia coprophila: 119081396
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Entry
119081396 CDS
T08269
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119081396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcoo03019
]
119081396
Messenger RNA biogenesis [BR:
bcoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119081396
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119081396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
119081396
NCBI-ProteinID:
XP_037046177
LinkDB
All DBs
Position
Unknown
AA seq
2394 aa
AA seq
DB search
MNQDSLSFTLTQISYLVSNLNKKNFTQNSRQLALLVKPFGLEADRHLLRCLFSNIDFGDS
IQVSKNSLHAKLLTQELTAQLNKSSLITNICFAIDNCFSYQKSLKPVGNILNQVSRALNC
SPILEVVIALALTHSTNSDFARIAENQIKIGLTSLIQQYVEIDTIRPNQEGGLNDISPEL
LQLILSLLSHGKYKKLGLSEVVYNKFIGQLARDFPRDRVPLILAPLIYTEDTEISAEKMS
ANSQGILTSAIMDTSWPNLVMDIGYSFTASVEDCKTHLINTGREILSQDVAKIVALMCRT
HTNLSDCSINLPTPSNAFWQGGQGVDQKDKTQPASISSTAEHTTWKPEIFVQALKEVAAN
INWTDVCFAFDHREFLIKDRIGLNILITTVRLGMQSSGVGQTFPVDCICNQWKNAEGQLS
LISLIIKNPDIYSFADHIYKSVQIESLKTPPEVDNKEIASWKSIHLVEALLTIAEQGFYT
QVLEHFKTPVQHCPDILFMALLQAQQPMTVLRQELFTSLVPIFLGNHPNSGTILHHAWNS
TNFNPQIRHIIMHSMSEWYIRGDYDQSRLSRILEVSQELKALSNLLNARSFMFVIDLACL
ASRREYLKLEKWLGDKIREHGEPFVHAIVKFLQRRCPEITGKIIVDQIPKAAQLPFETLS
TMLSCLQQCAANVQQELTEIILTMTSNCNMYLNKTKQPQQPQPPPNVLRAHRGLEAPFST
PNLGGMFAGTDSIAALGSSMAGLNLGAPASAAFNFNNVLNNIVSTPASPSRLLQAPSNSP
FPIMSLAAAPPVNNLGRIPATPTGEKLPITNASISSELAANVSKEVEDEANSYFQQIYNH
PPHPTLSIDEVLDMLQRFQDSPVRREREVYQCMLRNLFEEYRFFPNYPDKELITTAQLFG
GMIDRNLCTYVPLGLALRCVLDALRKPENSKMYFFGITALDRFKTKLHTYQKYCEHIKSI
AHFNSFPEHIIEYVKYGAQSQEPPNTPQGQLMPPSLPKMIPGSENPTALYRDSARSMSMT
PISVTPNPTAMAQASRNIKSIANATNINTLLVATADREEKIIVPPDTVQDKTAFIFNNLS
QLNLQQKCDEMKEILIKDYYSWLSQYMVLKRASIELNFHVLYSNFLDALKIPDIVRLVTK
ESFRNIRVLLRAEKGADNFSDRTLLKNLGHWLGMMTLGRNRPILQIDLDLKSLIVEAYHK
SENELLYVVPFVAKVLESCAKSRVFKPPNPWTMGIMNVLAELHQEPDLKLNLKFEIEVLC
KTFNIDVASLKPCIYLKDPEKALNIEYQLSQPKHQKELQAQQQQQQQQQMIQAMGGPAIN
DEIAPPPSVQSSGPNLSPIAPLESSGTIAMPIEPRYSYMDISVTSISNLAQHIVFSPNIA
ILHTQPQLKQLVRQAIERTITEWINPVVERSVRIGVNISEQLIRKDFALDPDESRMRTAA
HYMVRNLTASMAMITCKDQLLQSITANIKSAFQSALSQHPNELINEAVNQLAMDNAELAC
AFIQKSAIEKAIPDIDKRLSGDFDMRKIARPDRRYYDPNVLAYQSDRMPEPIKLKVGGVD
SSQFAVYEEFARNIPGFQTMTERDAALFIPKASLPDSLPVVPFNPVAPSSHGSIFGPDEF
GVLYEELGGKMEAFLNNVMTIPALQIQLTNMHALFECLVHARRNRDNLSALNLLNKAVEG
LLEGLVSNTEHMEQIKLYRDIHLRALRLLQDGRAFGAIWTNRAITKCMVECREDIRYNLE
AVDVLISANFVNLSQYDMMLVNMMDSGTHYVAVAFAMQLVQHYLVDERPSALVTENDFAN
TIDLLYRLSTHPRAPEGLAHLIEMLRLTHDPNTLMLDRTAAGPTQHIHSGILQVRSSEED
PPDFREKAECLLKEWVGIYHAQASGRDPIKSFGMFVNRMTLYGILKTDDLITRFFRQATQ
ICIDLAYRNLGDPTIAPQTAKTKVFQCIDAFVRLIALIVKHSGEHGNNSTKVNLLNKILG
IVVGVLLQDQEMHGANFQQLGYHRLFIMLFLELTAPEPVLETINLSVVTAFCHTYHILKP
SVAPGFCYSWLELISHRVFIGRILAMIPQQKGWSMYSALLMDLFKYLAPFLRNAELAKPV
QLLYKGTLRVLLVLLHDFPEFLCDYHFGFCDVIPPNCIQMRNLILAAFPRNMRLPDPFTP
NLKVDMLSEIATAPRIFTNYAANIHPLGFKKDLDSYLKARAPVTFLSELRGHLQISNEPG
SRYNVALMNSLVLYVGIQAITHIRSKNLVPNMTTIVHSAHMDIFQNLAVDLDNEGRYLFL
NAIANQLRYPNSHTHYFSCVLLYLFVETNSEAIQEQITRVLLERLIVNRPHPWGLLITFI
ELIKNPGYKFWEHDFVHCAPEIEKLFESVARSCMVVKSNNHQQMPNENDLQECN
NT seq
7185 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggattccttgtcgtttactttgacgcagattagttatttggtttctaacttg
aacaagaagaatttcacgcaaaatagccgacaattggcgttgctggtaaaaccgttcgga
ttagaagcagatcgccatcttctgcgttgcctcttttcgaacattgattttggggactca
attcaagtatctaagaattcactgcacgctaaacttttaacgcaggaactaacagcgcag
ttgaacaaatcctcactcataactaacatctgtttcgccatcgacaactgcttttcctac
caaaagtctttgaaaccagtcgggaatattttgaatcaagtttctagagcactcaactgt
tcaccaatattggaagttgtaattgccttagcattaacacattcaacaaattcggatttc
gcacgaattgccgaaaatcaaataaaaattggcctcacttcactcattcaacaatacgtg
gaaattgacacaattcgacccaatcaagaaggtggcctgaacgatatatcaccagaatta
ctacaattgattttgtcgttattgtcgcacggcaaatataagaaattgggtctatccgag
gttgtttacaacaaatttatcggtcaattggcgcgggacttcccgagagatcgagtgcca
ttgattctagcgccccttatttacacggaagatacagagatctcggctgagaaaatgtcc
gcgaattcgcagggtattttaacatcagccattatggatacgtcatggcctaatctggtc
atggatataggctattcatttacggcatcggttgaagactgcaaaacacatctgatcaat
actggtcgcgaaattctctcacaggatgtggccaagatagttgcgcttatgtgtcgaacg
catacaaatctttccgattgcagtatcaatttgccgacaccgagcaatgcattctggcaa
ggtggccagggtgtcgatcaaaaagacaagactcagccagcatcaatatcatcaacagct
gaacacacaacatggaaaccagaaattttcgttcaagcattgaaagaagtcgctgcgaac
ataaactggacggatgtatgctttgcttttgatcatcgcgaatttttgattaaagatcga
atcggactgaatattcttataacaaccgtccggcttggcatgcaatcaagtggtgttgga
caaacgttccccgttgactgcatttgcaaccaatggaaaaatgcagaggggcaactatcg
cttatctcgttgataatcaaaaatcccgacatttactcgtttgccgatcacatttacaag
agcgtgcaaattgaatcgctgaaaacgccaccagaagtcgacaataaagaaatagcatcg
tggaaatcaattcatctagtcgaagcattgctcacgatagctgaacaaggcttttacaca
caagtattggagcacttcaaaacacccgtccaacattgtccggacatattgtttatggca
ttgctacaagcgcagcaaccgatgacggtgctgagacaggagctttttaccagcttggtg
ccgattttcctgggcaatcatccgaattccggaacaatacttcatcatgcatggaattcg
acaaatttcaatccacaaattcgtcacatcattatgcactcaatgagcgaatggtacatc
cgcggtgactacgatcaatctcgattgtcacgcatactggaagtgtcgcaagaactgaag
gcattatcgaatcttcttaacgccagatcgttcatgtttgtcatcgatttggcatgctta
gcgtcgcgaagggagtatttgaagttggaaaagtggctgggtgataagattcgtgagcac
ggtgaaccgtttgttcatgcgattgtgaagttcttgcagcgacggtgtccagaaataacg
ggtaaaattatcgtagatcaaattccgaaagctgcacagttacccttcgaaacacttagt
acaatgttatcgtgtctacaacaatgtgcagcgaacgtgcaacaagaactcaccgaaatt
atactaacaatgaccagcaactgtaacatgtatttgaacaagacaaagcagccacagcaa
ccacaacctccgccgaatgtgttaagagctcacagaggattggaagctccatttagtact
cccaatctgggaggaatgtttgccggtactgattcaatagctgctttgggatcaagtatg
gccggtctgaatctgggagctccagcaagtgctgctttcaatttcaataatgtgctaaat
aatattgtgtcgactccagcttcgccatcccgcttacttcaagcaccttcaaatagtccg
ttcccgattatgtcactagcggcagcaccaccggtaaacaatttgggaagaattccagct
acaccaacaggcgaaaaattacccatcacgaacgcatcaatatcatccgaattggcggct
aacgtatcgaaagaagtcgaggacgaagcaaacagttattttcaacagatttataaccat
ccacctcatccaacactgtcaattgatgaggtgcttgatatgcttcaacgcttccaagat
tcaccggttcgtcgtgaacgagaggtttaccagtgcatgcttcgcaatttgtttgaagag
tatcgattcttccccaattaccccgataaggaattgataacgacagctcaactgtttggt
ggcatgattgatcgcaatctttgcacatatgttccactgggtttggcgttgcgatgtgta
ttagacgcgctacgaaaaccagagaactcgaaaatgtatttcttcggcataaccgccctg
gatcgcttcaaaacaaagctccacacataccagaaatactgtgaacacataaaatcaatt
gctcatttcaattcgtttccggaacacataattgaatacgtcaaatacggagcacaaagt
caagagccaccgaatacaccgcaaggtcaactaatgccgccatcgttgccgaaaatgata
ccgggtagcgagaatccaacagcattgtatcgagatagtgctaggagtatgtcaatgaca
ccaatttccgttacaccgaatccaactgccatggcacaagcatctcgtaacattaaatca
atagccaatgcgacaaacatcaatacattgctggtagcaacagctgatcgcgaggagaaa
attatcgttccacccgacactgttcaggataagactgcgttcattttcaacaatctaagt
cagttgaacttgcaacagaagtgtgatgaaatgaaggagattttgatcaaagactattac
tcatggttatcgcagtacatggtactgaagcgtgcttccatcgagcttaatttccacgtt
ctatactcaaacttcctggatgcattgaaaattccagacatcgttcgactcgttacgaag
gaaagttttcgaaatattcgggtattgttgcgggcggaaaagggagccgacaatttctcc
gatcgaacgctgctaaaaaatcttggtcattggttgggaatgatgacgctaggacgaaat
cgaccaatattgcaaattgatctcgacttgaagtcattgattgtggaggcgtatcacaaa
agtgaaaatgaattgctgtacgtcgttccattcgttgccaaagtgctggaatcatgcgct
aaaagtcgggtattcaaaccaccgaatccttggactatgggcattatgaatgtattggct
gaactgcatcaagagcccgatttgaagctgaacttgaaattcgaaatcgaagttttgtgc
aaaactttcaacatcgatgtggcaagtttgaaaccttgcatctatctgaaggatcccgaa
aaggcattgaatattgaatatcaactgtcgcaaccgaaacaccagaaggaattgcaagca
caacaacaacaacaacaacaacaacaaatgattcaagcgatgggtggtccggcgatcaac
gacgaaattgcacctccaccatcagtacaatcctccggtccgaacctatctcccattgca
ccgctcgagtcaagtggaaccattgcaatgccgattgagccgcgatacagttatatggac
atatcggtgactagcatatcgaatctggctcagcacattgttttctcaccaaacattgca
attttgcacacgcaaccacaattgaaacaattggttcgtcaagccatcgaaagaactata
actgaatggatcaatcccgttgtggaacgaagtgttcgaattggtgttaacatcagcgaa
cagttaattcgaaaggactttgctctggatccagatgagtccagaatgcgcaccgctgca
cactatatggtacggaatttgacagctagcatggccatgataacgtgcaaagatcagtta
ctgcaaagcattactgcgaatatcaagtctgccttccaatctgcattatcacaacatccg
aacgaattgataaatgaggcagtcaaccagttggcgatggataatgctgaactggcttgt
gcttttattcaaaagagtgcaattgaaaaggctatacccgacattgataagcgattgtca
ggggactttgacatgaggaaaattgctagaccagatagacgatactatgatccaaatgtt
ctcgcttatcaatcggacagaatgcccgaaccaattaaattgaaagttggcggtgttgat
agctcacaatttgctgtatacgaagaattcgccagaaatattccaggattccagactatg
actgaacgtgatgcagctttattcatcccaaaagccagtttgccagatagcttaccggtt
gtgccgttcaatcctgttgcgccaagttcacacggatcaattttcggtccggacgagttc
ggagttttatacgaagaattgggtggcaaaatggaagcgttcttgaataatgtgatgaca
attccagccctacaaattcaactaactaatatgcatgcactgtttgaatgtcttgtccac
gcaagacgaaatcgagacaacctcagcgcgctcaacctgttgaacaaggctgttgaaggt
ttgctggaaggtttggtctccaacacagaacacatggaacaaatcaaactgtatcgcgac
attcacttgagagcgttgcgcctattgcaagatggtcgtgcattcggagctatttggacg
aatcgagccatcacaaaatgcatggtcgaatgtcgtgaagacataagatataatctagaa
gctgtcgatgtattaatttccgcaaatttcgtcaatctcagtcaatacgacatgatgcta
gttaatatgatggatagcggtactcattatgtggcggtggcgtttgcaatgcaacttgtc
caacactatttagtcgatgaacgtcccagtgctttggtcacagaaaatgattttgccaac
accatcgatttactgtatcgactgtcaacacatccccgagcaccggaaggtctggcacat
ctcatcgaaatgttacgcttgactcacgatccgaacactttaatgttggaccggacagca
gccggaccgactcaacatattcattcgggcatacttcaagtgcgatccagtgaggaagat
ccaccagacttccgtgagaaggcagaatgtttgctgaaggaatgggttggcatctatcat
gctcaagcaagtggtcgggatccaattaagtcgtttggaatgtttgtcaataggatgacc
ttatacggcatattgaaaacagatgatttgattacacgatttttccgtcaagcaacgcaa
atatgcatcgatttggcctacagaaatcttggcgacccgacaattgcaccccaaacggcc
aagacaaaagtgtttcagtgtattgacgcatttgtgcgcctaattgctttgattgtcaag
cattcaggagaacatggcaataactcaaccaaagtgaatttgctaaacaaaattctgggc
attgtcgttggagttttgttgcaagatcaagaaatgcatggtgctaatttccaacaattg
ggatatcatcgactgtttattatgttatttttggaactgactgctccggaaccagtttta
gaaaccatcaacttaagtgtagtaactgcattctgtcatacgtatcacatcctgaaaccg
tccgtcgcacccggcttttgttattcgtggttggagttaatttcgcatcgggtgttcatc
ggtcgaatattggccatgattccgcaacagaaaggctggtcaatgtattcggcactgctg
atggacttattcaagtacctagcaccgttcttgaggaacgccgagctcgcaaagcctgtt
caattgttgtacaagggaactctacgtgttttgttggtgttgttgcacgattttccagaa
ttcctttgcgactatcatttcggcttttgcgacgtgattccaccgaattgcattcaaatg
cgaaatcttattctggccgcttttccacgcaacatgaggctgccagatccatttacgccg
aacttgaaagtggatatgttaagtgaaattgcgacagctccgagaattttcacaaactac
gcagccaacatccatccgttaggcttcaaaaaggatttagattcatatttgaaagctaga
gcaccggtcacatttttgtccgagctgcgaggacatttgcaaatatcgaatgagccggga
tcacgatacaatgttgcgctaatgaattcacttgtgctatacgttggtattcaagcaatt
actcacattagatcaaagaatctagtaccgaatatgacgactattgtccacagtgcacac
atggatatcttccaaaatctggcagtcgatctggataatgaaggtcgatatttgttcttg
aacgccatagcgaatcaattaaggtatccgaacagccatacgcattatttcagttgcgtg
ttgttgtacttgttcgttgaaactaactcggaagcaattcaggaacaaataacacgggtc
ctgttggaacgtttaattgtaaatcgaccacatccatggggtctattgatcacattcatc
gaactaataaagaatcccggatacaaattctgggaacacgattttgtgcactgcgctccc
gaaatagagaaacttttcgaatcagtcgcccgatcatgcatggttgttaaatcaaacaat
catcaacaaatgccaaacgaaaacgatttgcaagaatgcaattaa
DBGET
integrated database retrieval system
