Bradysia coprophila: 119081978
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Entry
119081978 CDS
T08269
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bcoo
Bradysia coprophila
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bcoo03016
]
119081978
Enzymes [BR:
bcoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
119081978
Transfer RNA biogenesis [BR:
bcoo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119081978
Prokaryotic type
tRNA splicing ligases
119081978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
119081978
NCBI-ProteinID:
XP_037047186
LinkDB
All DBs
Position
Unknown
AA seq
313 aa
AA seq
DB search
MNAKDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLSADPSKVSMRAKKRGLPQLGTL
GAGNHYAEIQVVDEIYDKFAASKMGIEDKGQVCVMIHSGSRGFGHQVATDALVQMEKAMK
RDKIETNDRQLACARIKSTEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFKTTPDD
LDMHVIYDVSHNVAKIEEHMVDGKQKTLLVHRKGATRAFPPHHPLIPVDYQLTGQPVLVG
GTMGTLQLRFDGNRKRNERNVWLDVSWSGKSSVARQVTQKFRLFGRARKYEISWHSDTRC
ITEIGNGRGTRVL
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccaaagatttggaagaagctttggaaatgggaatggactggtcgctgcgagaa
ggatacgtctgggctgaagataaggaacattgtgaagagtatggacgcatgttgagtgcc
gatccgtcaaaggtcagtatgcgtgcaaagaagcgaggtctaccacagttgggaacattg
ggtgcagggaatcactacgccgagattcaagtggttgacgaaatctacgataaatttgcg
gcgagcaaaatgggaattgaagataaagggcaagtttgtgtgatgattcattcaggaagt
cgaggcttcggtcatcaagttgctacggatgcattggttcaaatggaaaaggcaatgaaa
cgtgacaaaattgaaaccaacgatcgacaactagcttgtgcacggatcaaatccaccgag
ggacaagactatctaaaggccatggctgctgcagcaaatttcgcttgggttaaccgaagt
tcgatgacatttttgactagacaggcctttgcaaaacagttcaaaactaccccggatgac
ctggatatgcatgtcatttacgacgtgtcacataacgttgccaaaattgaagagcacatg
gtagatggaaaacaaaaaacgcttctagtccatcgaaaaggcgctacaagagccttcccg
ccacatcacccattgataccagtcgactatcaattaactggtcagccagtgctggttggt
ggcactatgggaactttgcagttacgttttgacgggaaccgaaaaaggaatgagcgaaac
gtttggctcgacgtgtcatggagcgggaagagctctgtcgcgcgccaagtcacgcagaaa
tttagattatttggacgtgctcgaaaatatgaaatctcttggcatagcgatacgcgttgc
atcaccgaaattggtaatggaagaggcaccagagtcctataa
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