Bradysia coprophila: 119083144
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Entry
119083144 CDS
T08269
Name
(RefSeq) RNA polymerase II degradation factor 1
KO
K14323
protein CASC3
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03013
Nucleocytoplasmic transport
bcoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119083144
03015 mRNA surveillance pathway
119083144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcoo03019
]
119083144
Messenger RNA biogenesis [BR:
bcoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119083144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
119083144
NCBI-ProteinID:
XP_037048680
LinkDB
All DBs
Position
Unknown
AA seq
952 aa
AA seq
DB search
MTDTPAVKVESESEALSDIPDSSSAVFESPDALKTATSSSHHDSEYDTASDTPSSDLDED
EDFEDDDVDDNGEDGSVVLELDHQRADGEDDGEKKKVDDDEDRSNPQYIPKRGVFYEHDD
RTAEEPEAERKADEEGKEEKSDSPTPVVKKPVKKSAAADRWSHDKYNETEQAPKSRAELV
HSYGYDIRNEDGPPRSRRRRRYGRGPNKYTRNWEDEKAYAKLTSQQEKQQRNPQDEFPEL
GSSRKSKASARDEKENKNDENRRSNRSPNQRSHQIHQDSGHRSHSDRYDRSYNNDFDGNR
PHDSQQSYEMSRSHSDGNRSQNDRFDGNRGKFFDNNRHEGNRQQNDHYDNNRSNSRYDGN
SRYSNDQNERNQSDRYDGKRSSDRFDGSRIDRYDQRMDRSGDKGNWDRRGGKTNDNRGGA
YREFTPKNQNRNHHPNNAPQSQSGGKGFNQRQNQSAEYESEMPVESLSFTNSKLSAAVPQ
SMNDRYSSNADYAQMDGSRQRNVSETDRPERPITGRQLGSSSRNSNQIQQSSLPIVNSIH
AQQPSMNIQQQISSQSQPPQHLPQQQQPNTNLMGTESRSAKRYSTLRQRTTEAVQNLSIP
QHLHEQQMLLQDAALMLQMQQNQEQIQIQPNLAHQPPSTNYAAQQMPLQIQNEYAALGPK
SQPTGTAQPNQQPLIQTATQNQSTGQTAQYPSPYFASNEFSGQASTPIQPTAQSTQLLSS
QQYPAQYAQQPTAPSPYGQPPPQTPYIQPAVNQQQQLLNYVPSIPPAQQPFSTVQSFSTY
PTVPNYNSVPSGITQSGITYYPPQTQPRPILSQRRPTNAIPILAPSERFAGKARNRQNNN
QFEEDDKSALNPPISPENIDHILDNMFTQRSTQRPPFQPPSQKSPSPESNAKVGDNQQNE
SVQNVTTASTFDGGNKQLEFVDAAIGKMSIDEISKLDSATAPNETVADSTAS
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgacagatactcctgctgtaaaagtcgagtccgaatcagaagcactatctgatataccg
gattccagtagcgctgtgtttgagtctccagacgctttgaaaacagcgaccagttcgtct
caccacgactccgaatacgatacagccagcgacactccttcatcggatttggatgaggat
gaagactttgaggacgacgacgtggatgacaatggtgaagacggtagtgttgtcctggaa
ttagatcatcaaagagctgacggtgaagacgatggagaaaaaaagaaagttgatgatgat
gaggatcgatctaaccctcaatatataccgaaacgaggtgtattttacgaacacgatgat
cgtacagctgaggaacctgaagctgagcgaaaggccgacgaggaaggtaaagaagaaaaa
agtgactctcctacacctgttgttaaaaagcctgtcaagaagtcagccgccgctgatcgt
tggtcacatgacaaatacaatgaaactgaacaagcaccaaaatctcgtgcagaactggtg
cattcctatgggtatgacattcgcaacgaggacggaccacctcgatcaagacgaagaaga
cgttatggtcgcggtccgaataaatacacacgcaactgggaggacgagaaagcgtatgct
aaattgacatctcaacaggagaaacagcagcgcaatccacaggacgaattccccgaactc
ggaagttctcggaaatcaaaggccagtgctagagatgaaaaagaaaataaaaatgatgag
aatcgtcgatcgaacagatcgccgaatcaacgttcacatcaaatccatcaggatagtggc
caccgttcacacagtgatcgctacgatcgttcgtacaacaatgactttgatggaaatcgt
ccacatgacagtcaacagagctacgaaatgagccgttcacatagtgatggaaatcgttcg
caaaacgaccggttcgatgggaaccgaggtaagtttttcgacaataacaggcatgaaggg
aatcgacaacaaaacgaccactatgacaataatcgttcaaacagtcgctatgatggcaac
agtcgatattcaaatgatcaaaatgagaggaatcaaagcgaccgctatgatggtaaacgg
tcaagtgatagattcgatggaagtcggattgaccgatacgatcaacgcatggaccgcagt
ggtgataaaggcaattgggatagaagaggcggcaaaacgaacgacaatcgaggtggagca
tatcgggaattcacaccgaagaatcagaatcgcaaccatcacccaaacaatgcaccacaa
agtcaatctggtggtaaaggttttaatcagcgacaaaaccaatctgccgaatatgaatcg
gaaatgcctgtcgaatcgctcagtttcactaactcgaagctgtccgctgctgtaccacag
tcaatgaacgatagatattcctccaatgcagactatgcacaaatggacggatctcggcaa
cgcaatgttagcgaaaccgatcgccctgagcgtccgataactgggcgtcagctgggatcg
tcgtcaaggaattcaaatcaaattcaacagtcatcattacccatagtcaactcaattcat
gctcaacagccatcgatgaacattcagcaacagatatcgtcgcaatcacaaccaccacaa
cacttgccacagcagcaacaaccaaacactaatttgatgggtactgaatctcgatctgca
aaacgttattcgacactacgtcaacgtaccactgaagccgtacaaaatttgtcaattcca
cagcatctccatgagcagcaaatgcttttgcaggatgctgcactaatgttgcaaatgcag
caaaaccaagaacaaattcaaatccaaccaaatcttgcccatcagccaccatcgacaaat
tatgcagcccagcaaatgccactgcaaattcaaaatgaatatgcagcactaggacccaag
tcacaaccaactggaaccgctcaaccgaatcaacagccacttattcaaacagccactcaa
aatcagtctacaggtcaaacggcgcagtatccgtcaccgtacttcgcatcgaatgaattt
tctggacaggcttcaacgccaatccagcctactgctcagtcgacgcagctactgagctca
caacaatatccggcacaatatgcgcagcaaccaactgctccgtccccatacggtcagcct
ccgccacaaacgccgtacattcagccggcagtgaatcaacaacaacaacttttgaactat
gtcccttcgattccacccgctcagcaaccattttcaacggtccaatcattttcaacctat
ccaaccgttcccaactataattcggtaccgagtggcattacacagagtggcattacatac
tatccaccacaaactcaacctcgtccaatcttgtctcaacgacgtcccaccaatgcgatc
ccaatcttagctccatccgaacgatttgccggtaaggctcgcaatcgtcagaataacaat
cagttcgaggaagacgacaaatcggcattaaatccaccaattagtccggaaaatatcgac
catatcttggataacatgttcacgcagcgaagcacacagcgtccaccgtttcagccaccc
tcacaaaaatcaccatcacccgagtcgaatgctaaggtcggtgacaatcaacaaaacgaa
tcggtccagaacgtaacaaccgcatcaacattcgatggaggaaacaagcagttggaattt
gttgatgcagcaatcggtaaaatgtcaattgatgaaatctcgaaattagacagtgcaaca
gctccgaatgaaactgtagcagattcaacagcaagttga
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integrated database retrieval system
