Bradysia coprophila: 119085375
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Entry
119085375 CDS
T08269
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119085375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcoo03019
]
119085375
03041 Spliceosome [BR:
bcoo03041
]
119085375
Messenger RNA biogenesis [BR:
bcoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119085375
Spliceosome [BR:
bcoo03041
]
Complex B
Other components
Prp19-related factors
119085375
Complex C
119085375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
Mad3_BUB1_I
NRDE-2
TPR_15
RPN7
ARM_TT21_C
PPR
TPR_7
TPR_10
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
119085375
NCBI-ProteinID:
XP_037051652
LinkDB
All DBs
Position
Unknown
AA seq
861 aa
AA seq
DB search
MITDLDFPEEDIPYEEEILRNAYSVKHWLRYIEHKKNAPKNGVNIVYERALKELPGSYKL
WYNYLRVRRKQVRGKCITDHQYEQVNNAFERALVFMHKMPRIWMDYCSFMTTQCKITRSR
HIFDRALRALPITQHHRIWPLYLNYLKAFDIPETAVRVYRRYLKLFPEDAEEYIEYLTEV
GKLDEAAQQLANVVDNENFVSKHGKSNHQLWNELCELISKNPDKVHSLNVDAIIRGGLRR
YTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLSKK
MEDAAKEEDVPEEVEVDIELRLARFEYLMERRLLLLNSVLLRQNPHNVPEWHKRVQLYEG
KPHDIINTYTEAVQTVQPKLAVGKLHTLWVEFAKFYEKNDQLDDARVVFEKATQIEYMKV
DDLAAAWCEWAEMEIRQDNYEFALKLMQKATAMPKRKAAYHDDNETVQMRVYKSLKLWSM
YADLEESFGTFKTCKAVYDRILDLKICTPQIIINYGLFLEEHNYFEEAFRAYEKGISLFK
WPNVFDIWNTYLTKFLKRYQGAKLERARDLFEQCLENCPPDLAKCFYLLYAKLEEEHGLA
RHAMAVYERATTAVKPEEMFDMFNIYIKKAAEIYGLPRTRQIYEKAIECLPEEKSREMCT
RFSEMETKLGEIDRARAIYAHCSQMCDPRITSDFWQAWKDFEIRHGNEDTMREMLRIKRS
VQATYNTQVNMMAAQMMNSGVGGTVADLAPGVKDGMRLLEAKAASMAVNNMPPPAVPAAK
GGSNIMFVRGETQGLPDKAKVSNPDEIDIDDESDGDDDDGMDGDEEEDVMKKIQIETKMV
PSKVFGGLKKKDDNADEDEED
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgataaccgatctagatttcccggaggaagacataccctacgaggaagagatacttcga
aatgcgtactccgtcaaacactggcttcgttacattgaacacaaaaagaacgctcccaag
aacggtgttaacattgtgtacgaacgagctctgaaagaactgcccggatcctacaaattg
tggtacaattatctgcgtgtgcgaaggaaacaagttcgcggcaaatgcatcaccgaccat
cagtacgagcaggtaaataatgcattcgaacgtgccttggtgtttatgcataaaatgcca
cgaatctggatggactattgctcgtttatgacgacacaatgcaaaattacccgttcccga
cacatattcgaccgtgcgttgagagcgctgcccatcactcaacatcatcgcatctggccg
ctgtatttgaactatctgaaagctttcgacatcccggaaacggcagtgcgggtctatcgt
cgatacttgaaattgtttcccgaagatgctgaggaatacattgagtatttgaccgaagtg
ggtaaattggatgaggcggcacaacagttggccaatgttgtagacaacgagaatttcgtc
tcaaaacatggcaaatccaatcatcagctgtggaacgaattgtgcgaattgatttcaaag
aatccggacaaagttcattcgctgaatgtcgacgcaatcattcgaggtggattgcgacgt
tacacggatcaattgggacacctgtggaattcgctggctgattattatgttcgtagtgga
ttgttcgatcgagcacgggatatctatgaagaggccatacaaacggtcaccactgtcagg
gactttacgcaggtctttgatgcatatgcacaattcgaagagttgagtttgagtaaaaaa
atggaggatgcagcgaaggaagaggacgtaccagaggaagtcgaagttgatatcgagtta
cgattagcacgtttcgaatatctgatggagagacgattgttgctgctgaacagtgtgctg
ttaagacaaaatccccataatgtacccgaatggcacaaacgcgtgcaattgtatgaaggc
aagccacacgacatcataaatacatacaccgaagccgtgcagactgtccaaccgaaactt
gccgttggcaagttacatacactgtgggtggaattcgcaaagttttatgagaaaaatgat
caattggacgacgcgcgagttgtctttgaaaaagctacacaaatcgaatacatgaaagtg
gacgatctggcggctgcatggtgtgaatgggctgaaatggaaattcgtcaggataattac
gaatttgcactgaaactaatgcagaaggccacagccatgccgaaacggaaggctgcttat
cacgacgacaatgaaaccgttcagatgcgagtctataaatcgctgaagctttggtcaatg
tatgcggatctggaagagagtttcggtacctttaagacgtgtaaggcggtgtacgatcgc
atactggacttgaagatttgtacgccacaaattataattaactacggtctgttcctggaa
gagcataactactttgaggaggcattccgtgcgtacgagaaaggcatttcgctgtttaaa
tggcccaatgttttcgacatttggaacacttacttgaccaagtttctgaagcgttatcaa
ggagctaaattggaacgtgccagagatttgttcgaacagtgcctggagaattgtccccct
gatttggccaaatgtttctatttgttgtatgccaaactggaagaggaacacgggctggcc
agacatgcaatggccgtgtatgaacgcgccacaaccgctgtcaaaccagaagaaatgttc
gacatgttcaacatttacatcaaaaaggctgccgaaatttacggtcttccgcgaacccgc
caaatttacgaaaaagccatcgaatgcctgccggaagagaaatcgcgtgaaatgtgtact
cgtttctccgaaatggaaacgaaattgggcgaaatcgatcgagcccgcgcgatctatgct
cattgcagtcaaatgtgtgatccgagaatcacttccgatttctggcaagcatggaaggac
tttgaaatccggcatggcaacgaggacacgatgagagaaatgctgcgaatcaaacgaagt
gttcaagccacttacaacactcaagtcaacatgatggcagcacagatgatgaattcgggt
gtgggtggaacggttgccgacttagcaccaggtgtaaaggatggcatgcgtttgttggaa
gcgaaagctgcttcgatggccgtcaataacatgccaccaccggcggtaccagctgccaaa
ggtggaagcaacatcatgttcgttcggggagagactcaaggactgcccgataaggcgaaa
gtgtcgaatccggatgagattgatattgatgacgagagtgacggtgatgacgacgatgga
atggatggtgacgaagaggaggatgtgatgaagaaaattcagattgagacgaaaatggtg
cccagtaaagtgtttggaggattgaagaagaaggacgacaatgcggatgaagatgaggaa
gattga
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