Brevibacillus composti: JD108_00690
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Entry
JD108_00690 CDS
T07811
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcop
Brevibacillus composti
Pathway
bcop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JD108_00690 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcop03400
]
JD108_00690 (mfd)
Enzymes [BR:
bcop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JD108_00690 (mfd)
DNA repair and recombination proteins [BR:
bcop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JD108_00690 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
Glyco_tran_WecG
UB2H
Motif
Other DBs
NCBI-ProteinID:
QQE74562
UniProt:
A0A7T5EL53
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All DBs
Position
113799..117347
Genome browser
AA seq
1182 aa
AA seq
DB search
MQVIINPMKQDAHIGTIVAGLETGLSEQLVSGLAGSARQALMVALRQMSNRPICVITHNM
FQAQKVYEDLIELVPAEDVLLYPGNELIGSELAVASPDILAQRIHVCNRLAKGFTGFLVV
PYAGLRRLAIPPHVWKESQIELSVGQELDIDAFLLRCIELGYERVDMVERKGELSVRGGI
VDLYPIDAEWPVRIELFDVEIDSIRSFDMATQRSLESIQSYTIGPAKEMFASTALLQESS
VRLEQKLGETVAKLKDAAAKEKVVENIGGDVERMKQGQRFPHLYSYISVIYPEQDTLLSY
MPQDTVLIVDEPSRVLDTAAQLQKEEGEWLTGRIMQGEYMANLSLSRPYEEIISSKQRQI
VYLSLFLRQSPKTQPQNIVNLTCRTMQNFHGQMNVLKTELARWKKAQDQIVFVAADLERA
KRLERVLHDYEMEADLLTEEASTVPPGRPTIILGNLQTGFELPLNKLVVITEGEVFTAKQ
RKARKVQQTMTNAERIKNYLELKPGDYVVHINHGIGKYLGIETKEILGIHKDYLHIQYAG
GDSLFVPIEQIDHVQKYVASEESQPKVYSLGGSEWKRVKNKVQSSVKDIAEDLIKLYAAR
EAAVGHAFSRDTEEQREFEAMFPYQETPDQLRAIAEVKQDMEKRRPMDRLVCGDVGYGKT
EVAIRAAFKAVMEGKQVAVLVPTTILAQQHYETFRERFADYPIRVEVLSRFRSRKEQNAT
MKGLKDGIVDVVIGTHRLLSKDIQFRDLGLLIVDEEQRFGVSHKEKLKQLKTNVDVLTLT
ATPIPRTLHMSMIGVRDLSVIETPPENRFPVQTYVMEYSPALVREAIEREMARGGQVFFL
YNQVQGIEQMAEQISMLVPDARIAVAHGQMNESELESVILDFLEGNYDVLVSTTIIETGV
DIPNVNTLIIHNADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKE
FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFINSVGFDLYSQMLKDAIDELKGEVKQEAA
PPVEINLQLDAYLPSTYITDSRQKIEMYKKFVAVSTLEDVDDLAEELLDRFGPLTKPVEN
LLTISRLRVYALEHKITEISQKNPDEIKLFLHPSQNNNIDGGALFALASNWSRRVGLSGG
QQIVITVKVKGLREDEGVQLVEKLLRQFHMVRKDTSTERPVS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtcatcattaacccgatgaaacaggatgcccatatcggcacgattgtagccgga
ttggagaccggactgagcgaacagctcgtctccggtctggcgggctccgcacggcaagct
ttgatggttgccctaaggcagatgagcaatcgtccgatctgcgtcattacccataacatg
ttccaggcgcagaaggtatatgaggacctcatcgagcttgtccctgcggaagatgtgctg
ctttatcccgggaacgaactgattgggtcggagctggctgttgccagtcccgacattctg
gcgcagcgcattcacgtgtgcaaccgtttggccaaaggctttacgggttttttggttgtg
ccttatgccggtttgcgccgtctggcgattcctccgcacgtctggaaggaatcgcaaatc
gagctgtcggtcgggcaagagctggatatagacgcgtttctgctgcgatgtatcgaactc
ggatacgagcgagtggatatggtggaaaggaaaggcgagctgagcgttcgtggcggcatc
gtggacctgtatccgattgacgccgaatggccggtccgcattgaactgtttgatgtagaa
atcgactcgatccgcagctttgacatggcgacgcagcgttccctggaatcgatccaaagc
tacacgatcggacccgccaaggagatgttcgcgtctaccgcgctgctgcaggaatcatca
gttcgtctggagcaaaagctcggcgagaccgtagccaaactgaaggatgcggccgccaaa
gaaaaagtcgtcgaaaatatcggcggcgacgtggagcggatgaagcagggacagcgtttt
cctcatctgtactcctatatttccgtgatctaccctgagcaggatacgcttttgtcctat
atgccgcaagacacggttctgatcgtcgatgaaccgtctcgcgtcttggacacggctgca
cagcttcaaaaggaagagggagaatggctgaccggacggattatgcaaggagagtacatg
gcaaatctgagcctgtcccgcccgtatgaggagatcatctcttccaaacagcggcagatc
gtctatctgtcgctatttctgcgccagtcccccaaaacgcagccgcagaatatcgtcaat
ctcacctgccgcacgatgcaaaattttcacggccagatgaatgtgctgaaaacggagctg
gctcgctggaaaaaagcgcaggaccagatcgtttttgtcgcggccgatctggaacgagca
aaaagattggagcgcgtcctgcacgactacgagatggaggcggatctcttaaccgaagag
gcgtcgacagtgcccccggggcggcccacaatcatcctgggcaatctgcaaacaggcttc
gaactgccgctgaacaagctagtcgtcatcacggagggcgaggtctttaccgccaagcag
cgcaaggcccgcaaagtgcagcagacgatgacaaacgccgagcggatcaagaactacctg
gagctgaagccgggtgattacgtcgtccatatcaaccacggaatcggaaagtatttaggg
atagaaaccaaggaaatactcggaattcacaaagattacttgcatattcaatacgccggc
ggggacagcctgtttgtgccgatcgagcagatcgatcacgtccagaaatacgtggccagc
gaggaaagccagcccaaggtgtacagcctcggcggcagcgagtggaagcgcgtcaaaaac
aaagtccagtcctccgtaaaagacatcgccgaggacctgatcaagctgtacgcagcgagg
gaggcggctgtcggccatgctttctcccgagatacggaggagcagcgggagttcgaagcg
atgttcccgtaccaggaaacgcctgaccagctccgcgcgatcgcggaagtgaagcaagac
atggagaagagacgcccgatggaccggctcgtctgcggcgacgtcggctacggcaagaca
gaggtggccattcgcgcggcgttcaaggcggtcatggagggcaagcaggtagcggtgctg
gttccgacgacgatccttgcccagcagcactacgaaactttccgggagcgcttcgccgat
tatccgatccgagtagaggtactcagccgcttccgttcccgcaaggagcagaatgccacg
atgaaggggctgaaggacgggattgtcgatgtcgtaatcggaacgcaccgtctgctctcc
aaggatattcaattccgcgatctcggcctgttgatcgtcgacgaggagcagcgattcggg
gtcagccacaaggaaaagctaaagcaattgaaaaccaatgtggacgtgctcaccttgacg
gcgacgccgatcccgcgtaccctgcatatgtcgatgatcggcgtccgcgatttgtcggtc
atcgaaacgccgccggaaaaccgcttcccggtgcagacctatgtgatggagtacagcccg
gccttggtgcgcgaggcgatcgagcgggaaatggcccgaggcggccaggtctttttcctg
tacaaccaggtgcagggaatcgagcagatggcggaacagatctccatgctggtgccggac
gcgcgcatcgcggtggcgcacggccaaatgaacgagagcgaactggagagcgtcatcctg
gactttttggaaggcaactacgatgtcctggtcagcacgaccatcatcgagacaggggtg
gacatccccaacgtcaacacgctgatcattcacaatgcggacaagatggggctgtcccag
ctctatcagctgcgggggcgcgtcgggcgttccaaccggattgcttacgcgtactttacc
tatcagcgggataaagtgctgacagaggtagcggaaaagcgtctgcaggccatcaaggaa
tttacagaattgggctccggtttcaaaattgccatgcgcgatttgtccattcgcggggcg
ggcaatctgctgggggcggagcagcacggcttcatcaactcggtcggttttgatttgtac
agccagatgctgaaggacgcgatcgacgagctgaagggcgaagtgaagcaggaagcggca
cctcctgtggaaatcaacctgcagctggatgcgtacctcccgtctacctacattacggac
agccggcaaaagatcgagatgtacaaaaagttcgtcgcggtctcgacgctggaggatgtg
gacgatctcgcggaggagctgcttgaccgcttcgggcctttgaccaagccggtggagaat
ctgctgacgatttcgcgtctgcgggtctatgcgctggagcataagatcaccgagatcagc
cagaagaatccggacgagatcaaactcttcttgcatcccagccaaaacaacaatatcgac
gggggcgcgctgtttgcgcttgccagcaattggagcaggcgggtcggcttgtcaggtgga
caacagatcgtgataactgttaaagtaaaggggttacgggaagacgagggcgtgcagctg
gtggaaaagctgcttcgccaatttcacatggtgcgcaaagacaccagtacggagaggccc
gtgtcttga
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