Brevibacillus composti: JD108_01295
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Entry
JD108_01295 CDS
T07811
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcop
Brevibacillus composti
Pathway
bcop03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JD108_01295 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcop03021
]
JD108_01295 (rpoC)
03400 DNA repair and recombination proteins [BR:
bcop03400
]
JD108_01295 (rpoC)
Enzymes [BR:
bcop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JD108_01295 (rpoC)
Transcription machinery [BR:
bcop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JD108_01295 (rpoC)
DNA repair and recombination proteins [BR:
bcop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JD108_01295 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Nro1_C
Motif
Other DBs
NCBI-ProteinID:
QQE74664
UniProt:
A0A7T5EL77
LinkDB
All DBs
Position
232144..235794
Genome browser
AA seq
1216 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTDPGDTPLDKKQLLSEKEYRNYREKYGHSFQAMMGAEAIKRLLQ
EIDLEKEVETLKEDLKTAQGQRRNRAIKRLEVLEAFRNSGNRPDWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVAKGLAHNIKSAKRKVERVQPEVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGSYYLTLEREGDIGEGTVYRDSHDAIAAYQNGYISLHTRIALP
TKELNKTSFTEEQRNALLVTTPGKLIFNEIFPPELPYINVPTKSNLQKGVPDEYFIFDKG
VNVKEFIAKLPDQGAVKKGFLGTIISECFRRFGTMETSKILDKIKELGFMYSTKAGITIA
VADIVVPEEKKAILDEADQKVQTVMAQYRRGLITEDERYDRVISIWSKAKDEVTEVLMKS
MDKFNAIYMMANSGARGNVSQITQLAGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREIDCGTDKGIRVTAIKDGKEEIEKL
VDRLIGRTCFETLRHPETGEVIVGRNEEITEEIAEVIEKAGITEVYIRNVLACRTSHGVC
KRCYGRNLATGDEVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAVISEIDGEVVDIREGKDRREIEVRGEAENKVYAVPYGSRIKVSVGTKLSA
GDELTEGSVDPKEMLKVRGQRGVSNYILQEVQKVYRMQGVEINDKHVEVMIRQMLRKLRV
IDSGETDLLPGSYVEVHEFEQANAKAFMEGKSPAVGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDRLLGLKENVIIGKLVPAGTGMSRYRNIKVQSRAEYEENREAEGA
VRVGEDEGAVRVGTPS
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
gtgatagacgtgaacaacttcgaatatatgaagatcggcctggcttccccggacaagatt
cgctcttggtctttcggggaagtgaaaaagccggaaacgatcaactaccgcacattgaag
ccggaaaaggacggtttgttctgcgaacgcatcttcggtccgaccaaggactgggagtgc
cattgcggaaaatacaagcgcgttcgctacaaaggcgttgtgtgtgaccgatgcggcgtg
gaagtcacccgcgccaaagtacgccgtgagcggatggggcatatcgagctggctgccccg
gtctctcacatctggtacttcaaaggcatcccgagccgcatgggtctggtgctggacatg
tctccgcgctccttggaggaagtcatctactttgcatcctacgtggtaaccgatccgggc
gatacgccgctggataaaaagcagttgctgtcggaaaaagagtaccgcaactaccgtgaa
aaatacggccactctttccaagcgatgatgggggcagaggcgatcaagcgcctgctgcag
gaaatcgatctggaaaaagaagtggaaacgctgaaggaagacctgaaaacagcacaaggc
caacgccgcaaccgtgcgatcaagcgcctggaagtgctggaggcattccgcaactccggc
aaccgtccggactggatggtgctggacgtgttgccggtgattccgccggaactgcgtccg
atggtacagctggacgggggccgctttgccacctccgacctgaacgacctgtaccgccgg
gtgatcaaccggaacaaccgtctgaagcgccttctggagctgggcgcaccagacattatc
gtgcagaacgagaagcgcatgctgcaggaagcagtagacgccttgattgataacggtcgc
cgcggccgtccggttacaggtccgggcaaccgtccgctgaaatccctcagccatatgctc
aaagggaaacagggacgcttccgtcagaacctgctcgggaagcgcgtcgactactccggc
cgttccgttatcgtcgtcggaccgaacctgaagatgtaccagtgcggtctgccgaaagaa
atggcgctggagctgttcaagccattcgtgatgaaagaactggtggccaaaggtctcgcg
cacaacatcaagagcgcgaagcgcaaggtagagcgcgtccagcctgaggtgtgggatgta
cttgaagacgtcatccgcgaacacccggtgctgttgaaccgcgcccccaccctgcaccgt
ctggggatccaggcgttcgaaccggtactggtcgaaggccgcgccatccgtctgcatccg
ctggtatgtacggcgtacaacgccgacttcgacggtgaccagatggccgtgcacgtgccg
ctgtccgcagaggcgcaggcggaagcccgtatcctgatgctggcggcgcaaaacatcttg
aacccgaaagacggcaagccggtcgtcacgccttcccaggacatggtgctcggttcgtac
tacctgaccctggagcgcgaaggcgacattggcgagggtaccgtctaccgcgattcgcat
gatgcgatcgccgcgtaccaaaacggttatatcagcctgcatacccggattgcattgccg
acgaaggaactgaataaaaccagctttaccgaagagcagcgcaatgcgcttctggtaacg
acgcccgggaagctcatttttaacgaaatcttcccgccggagctaccgtatatcaacgtt
ccgaccaagagcaatctgcaaaaaggcgtaccagacgaatacttcattttcgataaaggc
gtaaacgtaaaagagtttatcgccaagctgccagaccagggcgcagtgaaaaagggcttc
ctgggaacgatcatctccgagtgcttccgccgttttggcacgatggaaacctcgaagatt
ctggacaaaatcaaagaactcggcttcatgtactcgaccaaagccggtattactatcgcg
gtggccgacatcgtcgtgccggaggagaagaaagccattctcgacgaagcggatcaaaag
gtccaaaccgttatggcgcagtatcgccgtggtctgattacggaagacgagcgctatgac
cgagtgatttcgatctggtccaaagcgaaggatgaagtaacggaagttctgatgaagtcc
atggataagttcaacgcgatctacatgatggccaactccggtgcgcgtggtaacgtttcg
cagatcacgcagctcgccggtatgcgcggtctgatggcgaacccgtccggacgaatcatc
gagctgccgattaaatccaacttccgtgaaggtctgaccgtactcgagtactttatctcg
acgcacggtgcgcggaaaggtttggcggatacggcgctgcgtacagccgactcgggttat
ctgactcgccgtctggtagacgtagcccaagatgtcatcgttcgcgaaatcgactgcggt
acggataaaggcatccgcgtaacggcgatcaaggatggtaaggaagagatcgaaaagctg
gttgaccgcctgattggccgcacctgcttcgagacgctccgtcatccggagaccggcgaa
gtcatcgtcggccgcaatgaagaaattaccgaagaaattgccgaagtcattgagaaggcc
ggcattaccgaagtgtatatccgcaacgtactcgcttgccgcaccagccatggcgtgtgc
aaacgctgctacggccgcaacctggcgacaggcgacgaggtggaaatcggcgaagcagtc
ggtatcatcgccgctcagtccatcggggagccgggtacacagctgacgatgcgtaccttc
cataccggtggggttgcgggagacgatattacccaaggtttgccgcgtattcaagagctg
tttgaagcgcgcaatccgaaagggcaagccgttatctccgaaatcgacggggaagtcgtg
gacatccgcgaaggcaaggaccgccgcgagatcgaagtgcgcggcgaagcagagaacaag
gtgtacgccgtaccgtacggctcccgcatcaaggtctctgtcggaaccaagctgagtgcc
ggtgacgagctgaccgagggttctgttgacccgaaagaaatgctcaaggtccgcggccag
cgcggcgtatccaactacatcctgcaggaagtacaaaaagtgtaccggatgcaaggggta
gaaattaacgacaagcacgtcgaggtcatgatccgtcagatgctgcgcaagctgagagtc
atcgacagcggcgaaaccgatctcctgccaggctcttatgtcgaagtgcatgagtttgag
caagccaatgccaaagcctttatggaaggcaaaagcccggcggtgggccgtcctgttctt
ctggggatcacaaaagcatccctggaaacagactccttcctctcggccgcatccttccag
gagacgacgcgtgtcctgaccgatgccgcgatcaaaggcaaggtagaccgcctgctcggc
ctgaaagagaacgtcattatcgggaagctggttccagccggtaccggtatgtcccgctac
cgcaacatcaaagttcagtcgcgtgctgaatacgaagagaacagggaagccgaaggtgct
gtgcgcgtcggtgaagacgaaggcgcagtccgtgtaggaaccccctcctaa
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