Brevibacillus composti: JD108_03240
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Entry
JD108_03240 CDS
T07811
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bcop
Brevibacillus composti
Brite
KEGG Orthology (KO) [BR:
bcop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bcop03009
]
JD108_03240 (rlmD)
Enzymes [BR:
bcop01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JD108_03240 (rlmD)
Ribosome biogenesis [BR:
bcop03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JD108_03240 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
Methyltransf_11
PrmA
N6_N4_Mtase
Methyltransf_12
Methyltransf_32
TPMT
Motif
Other DBs
NCBI-ProteinID:
QQE74977
UniProt:
A0A7T5ELV1
LinkDB
All DBs
Position
609120..610553
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AA seq
477 aa
AA seq
DB search
MAKTAKKRRGAQAAAKQPLDLPVRLGQIVEIEITGLSHEGAGVGRVEGYTLFVAGALPGE
RVRARVEHLKKNFGFAGLAEVVEQSASRALPPCPLYDRCGGCSLQHLAYEEQLVHKQQIV
KDNLRRIGGFDVEGDKAITVHPTLGMSDPWRYRNKAQVPIGEQDGALVGGFYAEKSHEII
DMNECLIQHPAGDEAVNAVKAIASELCIRPYDEASHSGLLRHVVVKVGARTGEVMVVLVT
TEENIPQRDKLMEAIRTRLPGVKSIVQNINPARTNVIFGEKTVTLWGSDVIYDTIGPIRF
AISARSFYQVNPAQTEVLYNKTLEYAGATGMETVIDAYCGIGTISLFLAQKSRHVYGVEI
VPEAIADANRNAELNGIENVTFETGPAEVVIPAWKEQGIRADVIVVDPPRKGCDEALLAT
ILQMKPERVVYVSCNPSTLARDLKVLAELYEVKEVQPVDMFPHTGHVECVVRIYRRE
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaaaacagcgaagaaacgacgcggagcgcaggcggctgccaaacagccgcttgat
ttgcccgtgcgtctgggacaaatcgtagagatagagatcaccggcctcagtcacgaagga
gccggtgtcggacgggtggagggctacaccctgtttgtggcgggagcattgcccggtgag
cgcgtccgcgcccgtgtcgagcatctcaaaaagaatttcggctttgccggactggcggaa
gtcgtggagcagagtgcgagccgggcgctgccgccctgtccgctatacgaccgctgcggc
ggctgctcgctgcagcatctcgcctatgaggagcagctcgtccacaagcagcagatcgtc
aaggacaacctgcgccgcatcggcggctttgacgtcgagggagataaggcgatcacggtt
catccgacgctggggatgagcgacccgtggagataccgcaacaaggcccaggtgccaatc
ggcgagcaggacggcgcgctggtgggcggcttttacgcggagaaatcccatgagattatc
gatatgaacgaatgcctgatccagcatcccgcaggtgacgaggcggtaaacgccgtcaaa
gccatcgcgtcggagctgtgcatccgtccttacgatgaggcgagccattccgggctgctg
cggcacgtcgtcgtcaaggtaggcgcccgcaccggtgaggtgatggtcgtgctggtgacg
acagaggagaacattccgcagcgggacaagctgatggaagccatccgcacgcggctgccg
ggcgtgaagagcatcgtgcaaaatatcaatccggcccggaccaatgtgattttcggcgag
aagaccgtgacactgtgggggagcgacgtcatctatgacacgatcggcccgatccgcttt
gcgatctccgcgcgctccttttatcaggtgaatccggcgcagaccgaggtgctgtacaac
aagacgctggagtacgcgggggctacggggatggagaccgtcatcgacgcttactgcggg
atcgggacgatctcgcttttcttggcgcagaagtcccgccatgtgtacggcgtggaaatc
gtgcctgaagcgattgcggatgccaatcggaatgcggagctgaacgggatcgagaacgtg
accttcgagacggggccggccgaggtggttatcccggcgtggaaggagcaggggatacgc
gccgatgtgatcgtcgtcgatccgccgcgcaaaggctgcgacgaggcgctgctcgcgacg
attttgcagatgaagccggagcgggtggtgtatgtgtcctgcaacccgtcgacgctggcg
cgggatttgaaggtgctggcggagttgtatgaggtgaaggaagtgcagccggtggatatg
tttccgcatacggggcatgtggagtgcgtggtaaggatatatcggagggaataa
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