Brevibacillus composti: JD108_10290
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Entry
JD108_10290 CDS
T07811
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bcop
Brevibacillus composti
Pathway
bcop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JD108_10290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcop03019
]
JD108_10290
03009 Ribosome biogenesis [BR:
bcop03009
]
JD108_10290
Enzymes [BR:
bcop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JD108_10290
Messenger RNA biogenesis [BR:
bcop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JD108_10290
Ribosome biogenesis [BR:
bcop03009
]
Prokaryotic type
rRNA helicases
JD108_10290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RelE
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QQE76213
UniProt:
A0A7T5JQ84
LinkDB
All DBs
Position
1984043..1985629
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AA seq
528 aa
AA seq
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MTIFSDFPLHKNIVQAIYDMGFEEPSPIQAACIPKVLEGGDLIGQAQTGTGKTAAFGIPL
IEKVTTANRVQAIVLTPTRELAIQVAGELLRISKYKKIRTMPIYGGQSIGHQIRALRQGV
QVIVGTPGRVLDHLRRKTLKLDHVHTLVLDEADEMLDMGFVDDIETIINHIPEERQTLLF
SATMPPEIKRLANRYMKQPETIAVSREEVTAPLIEQVYYKVFERNKVESLCRILDSEDVE
LGIIFCRTKRGVDELTEVLQARGYLADGLHGDLSQAQRDKVMGAFREGSIEFLIATDVAA
RGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREMRQMMFIQKQTKA
EVVSRNVPSLEEVAERKQEQLKEQLVALLENDTIADMYAKVAESLVGQFPAEKVAAAALH
LAFHSEIGETEETDVYDFGETGAAKGMVRFFLNVGRNANVRPQDLVREISETVGIPGKAV
GRIDIFENFTFVEVPEDVAPFVYESLRQTRINGKRINLEPAKPRGKRS
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgacgattttttccgattttcctttacataaaaatattgtgcaggccatctatgacatg
ggctttgaagagccgtcgccgattcaggcagcttgcatcccgaaggtcctggaaggggga
gacctgatcggtcaagcccagacgggtacgggaaaaacagccgcattcggaattccgctg
attgaaaaggtaaccacggcaaatcgcgtccaggcgattgtcctcacgcctacgcgcgag
ctggcaatccaggtggcaggcgagctcttgcgcatctccaaatacaaaaaaatccgcacc
atgccgatttacggcggtcaatccatcggccatcaaatccgcgcccttcgtcaaggagtc
caggtgattgtcggtacgccgggccgcgtgctcgaccatctgcgccgcaaaacgctcaag
ctggatcacgtacatacgctcgtcttggatgaagcggatgagatgctggacatgggcttt
gtggacgacatcgaaacgatcatcaatcacatccccgaagaaagacaaaccctgctcttc
tccgcgaccatgccgccggaaattaagcggctggcaaaccgctatatgaaacagccggag
acgatcgcagtcagccgcgaggaagtaaccgccccgctgattgaacaggtgtactacaag
gtgttcgaacgcaataaagtagagagcctctgccggattctcgacagcgaggacgtcgag
ctgggcatcatcttctgccgcaccaagcgcggcgtagacgagctgaccgaagtcctgcag
gcacgcggctatctcgcggacgggctgcacggagatctctcccaggcacagcgcgacaaa
gtcatgggcgccttccgcgagggctcgatcgaattcttgatcgccacagacgtagctgct
cgcggaatcgatgtgggcaacgtctcccacgtcatcaactacgacattccgcaggactcc
gagagctacgtgcaccgcatcggacgcacgggccgcgccggacgcaaagggattgccatg
acactggtaaccccgcgcgaaatgagacagatgatgttcatccagaagcagacaaaagcg
gaggtcgtctcccgcaacgttccgtcgctggaggaagtggccgagcgcaagcaggagcaa
ttgaaggaacagctggttgcgctgctggaaaatgacacgatagccgatatgtacgccaag
gtagcggagtccctggtcggccagttcccggctgagaaggtggcggcagcagccctgcac
ctcgcattccacagcgaaatcggcgagaccgaagagaccgacgtgtacgacttcggcgaa
accggcgccgccaaaggaatggtccgtttcttcctgaacgtgggccgcaacgccaatgtg
cgtccgcaggacctggtgcgggaaatttccgagaccgtcggaattccgggcaaggcggta
ggccgcatcgatatcttcgagaacttcacgtttgtggaagtgccggaagatgtggcgcca
tttgtctacgaatccctccgccagacccgtatcaacggcaagcggatcaatctcgaaccg
gcaaaaccgcgtggcaagcgctcctga
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