Brevibacillus composti: JD108_21340
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Entry
JD108_21340 CDS
T07811
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bcop
Brevibacillus composti
Pathway
bcop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JD108_21340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcop03019
]
JD108_21340
03009 Ribosome biogenesis [BR:
bcop03009
]
JD108_21340
Enzymes [BR:
bcop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JD108_21340
Messenger RNA biogenesis [BR:
bcop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JD108_21340
Ribosome biogenesis [BR:
bcop03009
]
Prokaryotic type
rRNA helicases
JD108_21340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_30
SWI2_SNF2
Flavi_DEAD
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQE76726
UniProt:
A0A7T5JR54
LinkDB
All DBs
Position
complement(4287130..4288578)
Genome browser
AA seq
482 aa
AA seq
DB search
MGFEEATPIQEETIPVVLQGQDLIGQAQTGTGKTAAFGIPLVEKVSGEKEQIQAVVLTPT
RELAVQVAEELNKIGNVKRITALPIYGGQDITRQIRALKKHPQIIVATPGRFMDHMNRRT
IRLQGVEMVVLDEADEMLNMGFVDDIKAILKEMPEERQTLLFSATMPRPIQEIARNFMKD
PVTISIKAKELTVPNIVQHYMEVPEKQKFDVLCRLLDIHSPDLAIIFGRTKRRVDELSEA
LNKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVATDVAARGLDISGVTHVYNFDIPQ
DSESYVHRIGRTGRAGKTGLAITLVTPREIDHLRYIEKTTNRKMERRPVPTLAEAIEGQQ
RLTVEKLMETVGSDGLTMYKSLAEQLLDDVDSVSLVAAALKMLTKEPDTTPVRLTEEAPL
RVGKKKFTDQSRGRGPRPGAAKRGGGGGFARAGQGKGRPPVNPRGRRERDTSRDRAWGRD
RD
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgaggaagcgactccgattcaggaggagacgattccagtcgtattgcagggg
caggatttaattggtcaggcccagaccggtacagggaagaccgcggctttcggaattccg
ctagtggaaaaagtgagcggcgaaaaggaacagatccaggctgtcgtcctgacccctacc
cgggaactggccgttcaggtcgcagaggaattgaacaagatcggcaacgtcaaaaggatt
acggcgctcccgatctacggcggccaggatatcactaggcagatccgggcgctgaagaag
catccgcagattatcgtcgcaacgccgggccgtttcatggaccacatgaaccgcagaacc
attcgcctccagggagtggaaatggtcgttctcgatgaagcggacgagatgctgaacatg
ggctttgtggatgacatcaaggcgatcctgaaagagatgccggaggaacggcaaacgctg
ctgttttcggcgacgatgccgcgtccgattcaggagatcgcccgcaactttatgaaggat
ccggtgaccatctcgatcaaggccaaagaattgacggtacccaacatcgtgcagcattac
atggaggtcccggagaagcagaagttcgacgtgctgtgccgtcttctggacattcactcg
cccgatctggcgatcatcttcggcagaaccaagcggcgcgtagatgagctgtcggaggca
ttgaacaagcggggttacggagcggaaggcattcacggcgacttgaaccaggcgaaacgg
gacagcgtcctgcgcaagttcaaggaagggacgatcgaggtgctggtcgcgacggacgta
gccgcacgcggtctggatatcagcggcgtgacgcatgtttacaactttgacatcccgcag
gactcggagagctatgtccaccgcatcggccgtacgggacgggcaggcaaaaccggtctg
gcgatcacgctggtcaccccgcgtgaaatcgaccatctgcgctatatcgaaaagacaacc
aaccgcaagatggagagaaggcctgtgcctacgctcgccgaagcgatcgaagggcaacag
cgcctcacggtggaaaaattgatggagacggtcggcagcgatggtctgacgatgtacaaa
tcgctggccgagcagcttctcgatgacgtcgactccgtttcgctggtcgccgccgcgttg
aagatgctgaccaaagagccggacacgacgccagtccgcttgacagaggaagcccctctc
cgcgtcggcaagaagaaattcacggatcagtcccgtggaagaggcccgcgtccaggagcc
gcaaagcgcgggggcggcggcggttttgcgagagccggacaaggaaaaggcagaccgccg
gtcaaccctcgaggcagaagagagcgggacaccagcagagatcgggcttggggcagagac
cgcgactag
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