Bifidobacterium coryneforme: BCOR_0355
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Entry
BCOR_0355 CDS
T03236
Name
(GenBank) ATP-dependent DNA helicase, UvrD/REP family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bcor
Bifidobacterium coryneforme
Pathway
bcor03420
Nucleotide excision repair
bcor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCOR_0355
03430 Mismatch repair
BCOR_0355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcor03400
]
BCOR_0355
Enzymes [BR:
bcor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCOR_0355
DNA repair and recombination proteins [BR:
bcor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BCOR_0355
MMR (mismatch excision repair)
Other MMR factors
BCOR_0355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
AII74375
UniProt:
A0A076JGE2
LinkDB
All DBs
Position
470544..474719
Genome browser
AA seq
1391 aa
AA seq
DB search
MKQTAEQSAIVDAGVEDDLLVVAGAGSGKTMTMTQRIIALIRHGVPSEQILGLTFTRKAA
SELLSRVSAAVIRSRPGSDQGQVDPERNFLKPSVFTYDAFFQSIVRQYGLLVGMDQDTQP
LSAPGAFQLAAGVVAEHIDLVFPDRGEVMDQVEGGLDVDDPLSGFSAATIGGPVQAARLA
RARELGQDDVGSGAFETTVNQVLGITHALTSSMISRDCPDFDQALARVREWDQAFIDRTV
ALIDGRPIPDAEPTEASLKRPRRAKKDSDEDYELELRKMRKKRLDFRLYQANRLLRTVRT
REKLLTLADYYQQAKRQANMAEFGDFTVAAFQLVDRFPAIGAHYRRRFTHVFLDEYQDTS
TTQALLLAAIFHPNDKEGASRSAVTAVGDPFQSIYAWRGASPGAFRTFQSQFGMLADRPS
VQDGQLGGITTFGRSEDKEPLTLSRTFRNSRMVLKAANLLTVPLRQDTGRFSSARMNEVD
VARLEAREGADEGTVGLLGYSTIGQEIDAVVRFALHARSRYGGHGEDELGEDSDAPHAAV
LFRSKARMPQYRTALEAAGLTCQVVGYSALFDRPEVMDILALLRVICDHTDSDSLMRLLA
SARFNMSPADLRALASLAETINADSQYRALLQAGMVPKTDDGKVRRELVREQRDQVPNSL
FLIDLLLRDDLDDLLRTSRLSPRGRTLVSRAAEVIRTVQSQSSASVRQVVIAAIQALDLD
IDLVLAQAMEHPDQPLQPSRANAGVEALLEQVDTYISELPAGLGPSLPGFVAWVDAMVQS
PDLPDEGAGGHADVTLMTVHQAKGLEWDAVAVVGLSAGSFPSKQGDHLKIETLSTEASPV
GVPYRNTANTWLEDPQAVPVPVRADAMILPRFPHDARPGSEPGDDLGGLSLADLEDEAIG
EIRSTGVDDAGDDYDFLSARGYLPQKEEYGNRYHNDERRLAYVAVTRARHDLLLTFSTKA
NDTNPALNTPQADPETTASNFWRELVRGLEGEDGAVRLDSIDGGQDGDDGEPLPPTPPVG
LLVGQDAQAFRQALVQDALDQVGQLAARQDESDRVLWPITMGTKVSQALQRSAEWVGFDE
DPSGTPHAEGSLYADAVRVLQVGTGRLGVAGDRLVADLEALRRTGRRIIGHGAQSVTSIQ
ARSGGMEAVREREYWEGLVRPVPRVASPLAQAGTLFHEWAQRYIMPDFEPSSGLLDVTDQ
TVDDSLVESQTPSGSAVPLGSEAMAERRRMLADLDEEEAGRKQGGSDRTARNLRIWERRL
AESEWGQRTPAWVERPIVAVLDGTIVKGKLDAVFRGGLDQDDGSKLYTIVDWKTGARPTT
AEDISGKLAQLDMYRILLSRLEGIDLSTIDACLYYVSEAQPSRRLIRARPRSQEEILQGL
RRGAPQESDND
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagacagcagagcaatcggccatagtcgatgccggggtagaagatgacctcctg
gttgtggcgggagccggttccggcaagaccatgaccatgacacaacgcatcattgccttg
attcggcatggtgtcccctcggagcagattctgggcctgaccttcacccgtaaggccgcc
tcggaacttctctcccgggtctcggccgcggtcatcaggagtcgtccggggtcggaccag
ggccaggtggacccggagaggaacttcctcaaaccctcggtcttcacctatgatgccttc
ttccagtccatcgtccggcagtatggactcctggtggggatggaccaggacacccaaccc
ctgagcgctcccggagcttttcagctggccgcgggggtggtggccgagcatatcgacctg
gtcttccccgaccgtggggaggtcatggaccaggtcgagggtggtctggatgtggacgac
cccctgtccgggttctctgccgccaccatcggtggcccggttcaggctgccaggctggcg
cgtgccagggaattgggtcaggatgacgtgggttccggcgctttcgaaaccaccgtcaac
caggtcctcggcatcacccatgccctgacctcctccatgatcagtcgggactgcccggac
ttcgaccaggccctggcccgggtacgggagtgggaccaggccttcatcgataggaccgtg
gccctgatcgatggtcgtcccataccggatgctgaaccgaccgaagcctccctgaaaagg
ccgagacgagcgaagaaggacagcgacgaggactatgagctcgagttgcggaaaatgcgg
aagaagcgactggacttccggctttatcaggccaaccggctgctcaggaccgtcaggacc
cgggagaagctcctgaccctggccgattactatcagcaggccaaacgccaggccaacatg
gccgagttcggcgacttcactgtagccgccttccagcttgtcgaccgattcccggcaatc
ggagcccattatcgtcgccggttcacccacgtattcctggacgaataccaggacacctcc
accacccaggcgcttctccttgccgccatcttccatccgaacgacaaggagggggcatcc
aggtcggccgtgaccgccgtgggggatcccttccaatccatctacgcctggcgtggtgcc
agcccgggagccttccgcaccttccagtcacagttcgggatgctggccgacaggcccagt
gtccaggacgggcagcttggcggaatcaccaccttcggcaggtcggaggacaaggaacct
ctgacgctctcccgcaccttcaggaactccaggatggtcctgaaggccgccaatctcttg
acggttccgctccggcaggatacgggccgcttctccagtgccaggatgaacgaggtggac
gtggcccggctggaggccagggaaggagccgacgaggggaccgtcggcctgcttggctac
agcacgattggccaggagatcgacgccgtggtccgtttcgcccttcatgccaggtcacgt
tacggcgggcacggcgaggatgagctgggcgaggattccgatgccccccatgcggccgtc
cttttccggtccaaggccaggatgccccagtatcggacggcactggaagccgcaggcctg
acctgccaggtggtggggtattcggccctcttcgaccgccccgaagtcatggatatcctg
gccctgctcagggtgatctgcgaccataccgacagtgattcactgatgcgtcttctggct
tcggcccggttcaacatgagcccggccgatttgagagccttggcctccctcgcggagacc
atcaacgccgacagccagtaccgggctcttctccaggccggaatggtgcccaaaacggac
gacggcaaggtcaggagagagctggtacgagaacaacgggaccaggtaccgaactccctc
ttcctgattgatctcctgttgcgtgatgacctggacgacctgctccggacctcacgactc
agtccgcgtggccgtacattggtcagtagggcggccgaggtcattcgaacagtccagtcc
cagtcttcggcctcggtcaggcaggtggtcatcgccgccatccaggccctggacctcgac
atcgatctggtcctggcccaggccatggaacatccggaccagcctcttcaaccgagccgg
gccaatgccggagtcgaagcccttctggaacaggttgatacctacatatccgagttgcct
gccggcctgggccccagtcttccaggattcgtggcctgggtggatgccatggtccaaagt
cccgatctgcccgatgagggggctggtgggcatgccgatgtgaccctgatgaccgtccac
caggccaagggtctggaatgggatgccgtggccgtggtcgggctgtccgccggctccttc
ccgagcaagcagggcgaccacctgaaaatcgagacgctgagcaccgaggcttccccggtg
ggagtgccttaccggaacacggcaaatacctggctggaggatccgcaggcggttcctgta
ccggtcagggccgatgccatgattctccccagattcccccatgacgcccgtccgggatcc
gaaccgggggatgaccttggtggtctgagcctggccgatttggaggacgaggcaatcggg
gagatcaggagcaccggcgtggacgatgccggggatgactacgacttcctgagtgccagg
ggatacctgccgcagaaagaggaatacggaaaccgataccacaacgatgagcgccgactg
gcctatgtggccgtgaccagggccaggcatgacctcctcctgacgttcagcaccaaggcc
aatgacaccaatcccgccttgaacaccccacaggccgaccccgagacgactgcctcgaac
ttctggcgggaattggtcaggggtctggaaggcgaagatggtgccgtcagattggattcc
atcgatgggggccaggatggggacgacggggaaccgcttccccccactcctcctgtgggt
cttctggttggtcaggatgcccaggccttccgtcaggcccttgttcaggatgccttggac
caggtgggccagctggcagccaggcaggatgaatccgacagggtcctctggccgataacc
atggggaccaaggtgtcacaggccctgcaacgcagtgccgaatgggtgggcttcgacgag
gacccatccggaaccccgcacgcggaaggcagtctctatgccgacgcggtccgggtgctc
caggttggcaccggaaggctgggtgttgccggtgaccgccttgtcgcggacctggaggct
ctgcgccgtacagggcggagaatcatcgggcatggcgctcagagtgtcacttccatccag
gccagatcgggcgggatggaggccgtcagggaacgggagtattgggagggcctggtcagg
cctgtgccccgggtggcctcgcctctggcccaggccggtaccctcttccatgaatgggct
cagcgctacatcatgcctgacttcgaaccttcatcgggattgcttgatgtgaccgaccag
accgtggatgattccctggtggaatcacagaccccatccgggtcagccgttcccttgggg
tcggaggccatggcggaacgccgtcggatgctggcggatttggacgaggaagaagcggga
aggaagcaggggggaagcgaccgaacggcccggaacctcaggatatgggagcggcgtctg
gctgaatccgagtgggggcaaaggactcctgcctgggtggaacgccccatcgtggcggta
ctggacggcaccatcgtcaagggcaaactcgatgccgtgttccgcggagggctcgaccag
gatgacggctccaagctctacaccatcgtggactggaaaaccggggcccggcccacgacc
gcggaggacatcagcggaaaactggcccagctcgacatgtaccggatactcctttcacgc
ttggagggaatcgacctgtcgaccatcgacgcctgcctttactatgtaagtgaggcccag
ccatcccggcggctgatcagggcaagacccagatcccaggaggagatccttcagggtttg
cgtcggggtgctccgcaggagtcggacaacgactga
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