Bifidobacterium coryneforme: BCOR_0435
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Entry
BCOR_0435 CDS
T03236
Name
(GenBank) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bcor
Bifidobacterium coryneforme
Pathway
bcor03030
DNA replication
bcor03430
Mismatch repair
bcor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bcor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BCOR_0435
03430 Mismatch repair
BCOR_0435
03440 Homologous recombination
BCOR_0435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcor03032
]
BCOR_0435
03400 DNA repair and recombination proteins [BR:
bcor03400
]
BCOR_0435
Enzymes [BR:
bcor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BCOR_0435
DNA replication proteins [BR:
bcor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BCOR_0435
DNA repair and recombination proteins [BR:
bcor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BCOR_0435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
DUF5487
Motif
Other DBs
NCBI-ProteinID:
AII74452
UniProt:
A0ABD4AC13
LinkDB
All DBs
Position
571379..574939
Genome browser
AA seq
1186 aa
AA seq
DB search
MSSSQSNFVHLHTHTHYSTLDGASKIPDLVSEVKAQGQPAVAITDHGNMHGAYEMWRTAV
DAGVKPIIGIEAYVTPETARQDKTRVRWGTEEQRSDDVSGGGFITHMTLWASDDEGLVNL
IKASSLANLEGLVGKWPRMDKDLLSTYHKGVIATTGCPSGIVQTRLRLGQFDEALRAAGE
FQDIFGKENYYIELMDHGLDIERRVTKDLLEIAKRLDAPLVATNDSHYVREEDASAQDAL
LCINSGSRLTDPGRFKFDGSGYYIRSSEEMRQIFKEFPEACDNTLEIAERCNIMFDDHED
GAFMPRFDCPEGWDETSLFLKKVDEGLKNRYPDGVPEEVSHQADYECGVICQMQFTGYFL
VVSDYINWAKQHGIMVGPGRGSAAGSMVAYAMGITELDPLKHGLIFERFLNPERVSLPDI
DVDFDPEGRAKVLEYVGEKYGSDKVAQCVTYGTIKTKQALKDSARIMDYEYSMGDQVTKA
LPPSANGKDMSLKEIFDPGSKRFPEAKEFRDLYDSNPDVKRITEEAKGIEGIIRQTGVHA
CATIMASNPITDTSPLMERNDGTVTTTFEYHTCETLGLVKMDFLGLSNLTVIRDSITNIE
RNGKEPISIEKVPLDDKETYELLSRGDTLGVFQLDGDGMRSLLRMLKPDNFNDISALIAL
YRPGPMDMNSHINYAKRKNGQQKIEPIHPEVAEPLKAVLDETYGLIVYQEQVQSAARILA
GYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKEHGYSREAAQAVWDVLVPFSGYAFNK
AHSAAYALIAYWTAYLKTHYPVEFMAALLENERTNKDKTALYLGEARRMGIQILPPDINE
SVAAYSAVGDVVRFGLAAIRNVGSKAVQAIIDERSGPRGRFVNFMDFVKRVPMDVLNKRT
VESLIKGGAFDGIDPNRRALFQVHDEAIDQVMPIKRKQAEGQFDLFAEADDDGGNESDAL
GDAQVTIPDIEEWEKSTKLNFERQMLGLYVSDHPLSGMTSVLAGMRDMSIAQLLNRANTM
GNQTVTLAGLVTAVDRRVSKKGNPWAIVTIEDLESSIQCMFFGKVYDANADDLSLDSVIR
VRGLVELRDEESSLRVTDMEVPMLESADERPLTITLPRTALDRGRMERLAQILKTHPGYC
QVRLAVTDERGNVRMLTFGDGFRTTHDTSMLAEIKSVFGPSCLPSA
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcttcccagtcgaacttcgttcacctgcacacccacacccattactccaccctg
gacggggcctcgaagatccccgacctggtctccgaggtcaaggcgcagggccagccggca
gtggccatcacggaccatggcaatatgcacggtgcctacgagatgtggcggaccgccgtg
gacgcgggtgtcaagcccatcatcggcatcgaagcctacgtgacccccgaaacggcccgg
caggacaagaccagggttcgttggggcaccgaggagcagcgttcggatgatgtctccggt
ggtggtttcatcacccacatgaccctctgggccagtgatgacgagggtctggtcaacctg
atcaaggcctcctcactggccaatctggagggtctggtgggcaagtggccacgaatggat
aaggacctcctttccacctaccacaagggcgtcatagcaacaaccggttgcccatcgggc
atcgttcagaccaggctgcgtctggggcagttcgacgaggccctccgggctgccggggag
ttccaggacatattcggcaaggagaactactacatcgagttgatggaccacgggctggat
atcgagcgccgggtgaccaaggaccttctggagatcgccaagcggttggatgcccctctg
gtggccaccaacgactcccattatgtgagggaagaggatgcctcggcacaggatgccctg
ctctgcatcaactccggttcgcgccttacggaccccggtcgattcaagttcgacggttcc
ggctactacatccgttcgtccgaggagatgcggcagatattcaaggagttccccgaagcc
tgcgacaacactcttgagatcgccgagcgttgcaacatcatgttcgacgaccatgaggac
ggggccttcatgccccgcttcgactgcccggagggatgggatgagacctccctcttcctg
aagaaggtcgatgagggactgaagaaccgctatccggacggggtgcccgaagaggtatcc
catcaggctgactacgagtgcggtgtgatttgccagatgcagttcaccggctacttcctg
gtggtctccgactacatcaactgggccaagcagcatggcatcatggtgggtccgggccgt
ggttccgcagcaggttccatggtggcctacgccatgggcatcaccgagttggaccctttg
aagcacggactgatcttcgagcgtttcctcaaccccgagcgtgtgtccctgcctgatatc
gatgtggatttcgaccccgaaggcagggcgaaggtcctggagtatgtgggcgagaagtac
gggtccgacaaggtcgcccagtgcgtgacctacggcaccatcaagaccaagcaggccctg
aaggactctgccaggatcatggactacgagtactccatgggtgaccaggtgaccaaggcc
ctgcctccctccgccaacggcaaggacatgagcctcaaggagatattcgatcccggttcc
aagcggttccccgaggccaaggagttccgtgacctctacgattccaatccggacgtgaaa
cgaatcaccgaggaggccaagggcatcgaggggatcatacgccagaccggtgtgcacgcc
tgcgccaccatcatggcatccaaccccatcaccgacacctcccccctgatggagcgcaac
gacggcacggtcacgaccaccttcgagtaccacacctgcgagaccctcggactggtcaag
atggacttcctggggctttccaaccttacggtcatcagggattccataaccaacatcgag
cgcaacgggaaggagccaatcagcatcgagaaggttcccctggacgacaaggaaacctat
gaactcctatccaggggtgataccctgggcgtcttccagctcgatggtgacgggatgagg
tccctcctgaggatgctcaagcccgataacttcaacgacatatccgccctgatcgccctg
taccggccggggcccatggatatgaactcccatatcaactacgccaagcgcaagaacggc
cagcaaaagatagaacccatccatcccgaggtggccgaacccctcaaggcggtcctggac
gagacctacggtctgatcgtctaccaggagcaggtccagtcggccgcgcgaatcctggcc
ggatactccctgggcaaggctgatgtgctccgtcgagccatgggcaagaagaagcccgag
gtcctggccaaggagcaggtgcccttcttcgagggtatgaaggagcacggatactcccgg
gaggccgcccaggccgtctgggacgttctggtccccttctccgggtacgccttcaacaag
gcccactccgccgcctacgccctgatcgcatactggaccgcctacctgaagacccactat
ccggtggagttcatggcggccctcctggagaacgaacggaccaacaaggacaagacggcc
ctctatctgggcgaggcacggcgtatggggattcagatcctgcctccggacatcaacgag
tccgtggccgcttattccgcagtcggcgacgtggtccgcttcggtctggcggccatccgc
aacgtgggttccaaggcggtccaggcgatcatcgacgagcggtcaggtccccggggcagg
ttcgtcaacttcatggacttcgtcaagcgggtgcccatggacgtcctcaacaagcgcact
gtggaatccctgatcaagggcggtgccttcgacgggatcgaccccaacaggcgggccctc
ttccaggtgcatgacgaagccatcgaccaggtcatgcctatcaagcgcaagcaggccgag
gggcagttcgacctcttcgcggaggccgatgacgacggggggaacgagtcggatgccctc
ggtgatgcccaggtgaccattcccgacatcgaggagtgggagaagtccaccaagctcaac
ttcgaacgccagatgctgggcctctatgtatccgaccacccgctgagcggtatgacctcg
gttctggcgggtatgcgcgatatgtcgatcgcccagctgctgaaccgggcgaacaccatg
ggcaaccagaccgtcaccctggcaggactggtcacggccgtcgacaggagggtctccaag
aaggggaacccctgggccattgtcaccatcgaggatttggaatcctccatacagtgcatg
ttcttcgggaaggtatacgacgccaatgccgacgacctctccctggactcggtgatccgg
gtgcggggactggtggagttgcgtgatgaggaatccagcctgcgggtcaccgacatggag
gtgcccatgctggagtcggccgatgaacggcctctgaccatcaccctgcccaggacggcc
ctggaccgcgggcgaatggagcggctggcgcagattctgaagacccatccagggtactgc
caggtcaggctggctgtgaccgatgagcgggggaacgtacgcatgctgaccttcggggac
ggcttcaggaccacccacgacacctcgatgctggctgagatcaaatcggtcttcgggccc
tcctgccttccctcggcctag
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