Bifidobacterium coryneforme: BCOR_1245
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Entry
BCOR_1245 CDS
T03236
Name
(GenBank) putative Ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bcor
Bifidobacterium coryneforme
Pathway
bcor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCOR_1245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcor03019
]
BCOR_1245
03009 Ribosome biogenesis [BR:
bcor03009
]
BCOR_1245
Enzymes [BR:
bcor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BCOR_1245
Messenger RNA biogenesis [BR:
bcor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BCOR_1245
Ribosome biogenesis [BR:
bcor03009
]
Prokaryotic type
rRNA processing factors
BCOR_1245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AII75250
LinkDB
All DBs
Position
complement(1520325..1523147)
Genome browser
AA seq
940 aa
AA seq
DB search
MPRNKNEDSQEDSSANSMQTSQQASDQPQAEKGTTRRRRSGRRVVRVAGAAGAHVPVQVE
ADEHEEATSDKGRRRRVKVQDDGGDTRSESVSRRRSRRNDPEQEPGLSESQASDRDVAEE
DAEAPTSRRRKVQTRSRRSARTKTSESTESGSRSRSDAGRDVEDGRDDRQERALEAVESL
TGTDPGDDDQDRKSRSTRSRSRSSRSGSSQSAPARPMTSLLFQEPVIPVVQDDDDEPVME
DDEEPAPTRSSRRSRSRRSRNAIDHEPLAEDEERPESGSRRSRRLNAEERRAADEVEQIE
EDLDHEGITFINDEDESEEEVTSRSSRRRRRGKSERTHEEESEKSGSRRNRRSRDHESEE
EEEGGLTRRRRRRRGSKSSDSEGEETGGTRRSRKQQYIDEITDIEGSTRLEAKKQRRRDN
RRERSRQSQLVEQDFLARRESVNRLMVVREKEQHTQISVIEDDILVEHYVSDIQEVSTVG
NVYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDTTRLEGQPRRIELAFKSGDPVLV
QVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLADHERSRLKGIISRIAPKDM
GVIIRTAADGASEEALTKDLENLQRQWEEIESKRKEFLHGKRPKLLQGEPDVAIRVVRDI
FNDDFASLVVQGDRVYDRVENYLDTMAPDLRDKLVGWDPSEHEGKDVFDKWGIDSQLRKG
MERQVYLPSGGSLVIDRTEAMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLR
DIGGMIMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLV
EAFSEECPTCHGRGFILHDEPTISASYDDPYAVKGGDPFVKTNKHSHNAPAKESTTTGST
PAVKAKLARIAAAAQAAADEDVQDDDEMEATNPLDVGKES
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
gtgcccaggaacaagaacgaggacagtcaggaagactcctcagcaaactcaatgcagacc
agtcagcaggcgtccgaccagcctcaggccgaaaagggaacaacccggcgtcgccgcagt
ggcaggcgtgtggtgcgcgtggccggtgcggccggcgcccatgtgcccgtccaggtcgag
gccgatgagcatgaggaggcgacctccgacaaggggcgtcgtcgccgtgtcaaggtccag
gacgatggtggggatacccgttcggagtccgtctcccgtcgccggtcacgcaggaatgat
ccggaacaggaaccgggcctgagcgaatcgcaggcttcggacagggatgtggccgaagag
gacgcggaggcacctacctcccggcgccgtaaggtgcagaccaggtcccgcaggtcagcc
cgcaccaagacctcggaatcgactgaatccggttcccgcagccgttccgacgctggccgt
gatgtcgaagacgggcgggatgaccgccaggaacgtgctctggaggccgtggaatccctg
accggtaccgatccgggggatgatgatcaggaccgcaagtccagatcgaccaggtcccgg
tcccgttcgtctcgttccggttcgtcccagtcggcaccggcccggcccatgacctccctc
ctcttccaggagccggtgattccggtggtgcaggatgacgatgacgagcccgtcatggag
gatgacgaagaaccggcacccaccaggtcatcccgcaggtccaggagccgccgctcccgc
aatgccatcgaccatgagcctctggcagaggacgaggagcgtcctgaatcgggatcccgt
cggtcgcgaaggctcaacgccgaggagcgtcgtgccgccgatgaggtggagcagatcgag
gaggacctcgaccacgagggcatcaccttcatcaacgatgaggacgagagtgaggaggag
gtcacctcccgctcttccaggcgacgtcgtcgcggcaagagcgagcgcacccatgaggag
gaatccgagaagtccggttctcgtcgcaatcgccgctcgcgggaccatgaaagcgaagag
gaggaagaaggggggctgacccgtcgacgcaggcggaggcgcggctccaagtcttccgat
tccgaaggtgaggagaccggcggtacccggcgctcccgcaagcagcagtacatcgacgaa
atcacggatatcgaaggatccacccgcctggaggccaagaagcagcgtcggcgcgacaac
cgtcgcgagcgttcgcgccagtcccagttggtggagcaggacttcctggcccgccgtgag
agtgtcaaccggctcatggtggtgcgtgaaaaggaacagcacacacagatttcggtcatt
gaggacgacatcctggtggagcactatgtctccgacatacaggaggtctccacggtcggc
aacgtctacctggggcgggttcagaacgtcctgcccagcatggaggcggcctttgtcgat
atcggacaggcccgcaacggcgttctctacgcgggtgaggtcaactgggacaccacccgt
ctggaggggcagccccgacgtatcgagctggccttcaagtccggtgatccggtcctggtc
caggtcaccaaggatccgatcgggcataagggcgcccgtctgacctcccaggtgaccctg
gccggacgtttcctggtcctggtgccctccgggggcatgaccggcgtcagccgcaagctg
gccgaccatgagcgctcccgtctgaaggggatcatctcacgcatcgcccccaaggacatg
ggggtcatcatccgcaccgcggccgatggtgccagcgaggaggccctgaccaaggacctg
gagaacctccaacgccagtgggaggagatcgagtccaagcgcaaggagttcctgcacggc
aagcggcccaagctccttcagggcgaacccgatgttgccatccgtgtggtgcgggatatc
ttcaacgatgatttcgccagtcttgtcgtccagggcgatcgggtctatgaccgggtcgag
aactacctggacaccatggcccccgatctcagggacaagctggtggggtgggacccgtcc
gagcatgagggcaaggacgtgttcgacaagtggggcatcgacagccagctgcgcaaggga
atggagcgtcaggtctacctgccctccggcggttccctggtcatcgaccgtaccgaggcc
atgaccaccatcgatgtcaacacaggacgattcatcggcaggggcaaatccttggaagag
accgtgaccaggtgcaacctggaggcctccgaggagattgcccgccagctgcgtctgcgc
gacatcggcggcatgatcatgatcgactacgtggatatggtcatgccggccaaccgcgac
ctggtgcttcgccgtctggtggagtgcctggcccgggatcgcaccaagcaccaggtggcc
gaggtcacctctctgggtctggtccagatgacccgcaagcgggtgggccagggcctggtc
gaagccttctccgaggagtgccccacctgccatgggcgcgggttcatcctccatgatgaa
ccgaccatctccgcctcctacgacgacccctatgccgtcaagggcggggatcccttcgtc
aagaccaataagcacagccacaatgcgccggccaaggagagcacgaccaccggttccacc
cccgctgtcaaggccaagctggccaggatcgcggcagccgcccaggccgctgcagacgag
gacgtgcaggacgatgacgagatggaggccacgaatccgctggatgtcggcaaggagtcg
taa
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