Bradyrhizobium commune: IC761_16610
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Entry
IC761_16610 CDS
T09283
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bcou
Bradyrhizobium commune
Pathway
bcou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IC761_16610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcou03019
]
IC761_16610
Messenger RNA biogenesis [BR:
bcou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IC761_16610
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
RNase_J_C
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
QPF94788
UniProt:
A0A7S9DBX5
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All DBs
Position
3526362..3528032
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AA seq
556 aa
AA seq
DB search
MARPDELVFAPLGGVGEIGMNLSIYGLGNRHQRSWLAVDLGVSFGDEEHLPGIDLIMPDI
GFLEKERKNLMGLVLTHAHEDHFGAIIDLWPKLQCPIYATKFSAALFEAKCAAERNAPNI
PVTVIPSGGRVDIGPFNVEFIPVAHSIPESHALAIHTEAGTVLHTGDWKIDPTPNIGRPT
DEKRLRELGEEGVLALIGDSTNAVRDGRSPSETEVARTIIDLVKSAKGRVAVTTFASNVA
RIKAVADAAKAADREVVVVGRAMERVVQVARETGYLDGVQNFRSPEVYGHLPQDKVLALC
TGSQGEARAALARIANDDHPEITLNRGDSVIFSSRTIPGNEKAVGAIINNLILQGVEVIT
DRTHLVHVSGHPRRDELRDMIAWTRPQLLIPVHGEALHLHEHAKLARAAGVPRVLVVRNG
DLVKLGPGDPGIIGEVPSGRLYKDGTILEDAKSRAVVERRRMAFSGCAFVAIAMTAQGEL
ADDPEVDLVGIPEKNRAGEPFDDIVFDAVMSTIEGLPRARRRDPDALGESVRRAVRAVIN
EHWGKKPPCLVHVLTV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggcccgacgaactggtgtttgcgccgctcggcggtgtcggcgagatcggcatg
aatttgtcgatctacggcctcggcaaccgccaccagcgttcctggttggcagtcgatctc
ggcgtctccttcggcgacgaggagcatctgccgggcatcgatttgatcatgcccgacatc
ggcttcctggagaaggagcgcaagaacctgatggggctggtgctcacgcacgcccatgag
gaccatttcggcgcgatcatcgatctctggccgaagctgcaatgcccgatctacgcgacc
aaattcagcgcggcgctgttcgaggccaaatgcgccgccgagcgcaacgcgccgaacatc
cccgtcaccgtgatcccgtcgggcggacgggtcgacatcggcccgttcaacgtcgagttc
atcccggttgcgcattcgattccggaatcgcatgcgctggcgatccacaccgaagccggc
accgtgctgcacaccggcgactggaagatcgacccgaccccgaatatcggccgtccgacc
gatgagaagcggctgcgcgaattgggcgaggagggcgtgctcgccctgatcggcgattcc
accaatgcggtccgcgacggccgctcgccctcggaaaccgaggtcgcccggaccatcatc
gacctcgtcaaatcggccaagggccgcgtcgcggtcacgacctttgcctccaacgtcgcc
cgcatcaaggcggtcgccgacgccgcgaaggccgccgatcgcgaggtcgtcgtcgtcggg
cgcgccatggagcgcgtggtgcaggtcgcgcgcgagaccggctatctcgacggcgtgcag
aatttccgctcgcccgaggtctacggccacctgccgcaggacaaggtgctggcgctctgc
accggcagccagggcgaagcccgcgccgcgctggcgcggatcgccaatgacgatcatccc
gagatcacgctcaaccgcggcgacagcgtgatcttctcctcgcgcaccattcccggcaac
gagaaggcggtcggtgcgatcatcaacaatctgatcctgcagggcgtcgaggtcatcacc
gaccgcacccatctggtccacgtctccggccacccgcgccgcgacgagctgcgcgacatg
atcgcctggaccaggccgcagctcctgatccccgtccatggcgaggccctgcatctgcac
gagcacgcaaagctcgcccgcgccgccggcgtgccgcgggtgctggtggtccgcaacggc
gacctggtcaagctcggtcccggcgatcccggcatcatcggcgaggtgccctcgggccgg
ctctacaaggacggcaccatcctcgaggacgccaaatcgcgtgccgtggtggaacgtcgc
cgcatggcgttctccggctgcgccttcgtcgccatcgccatgaccgcgcagggcgagctt
gccgacgatcccgaggtcgatctcgtcggcatccccgagaagaaccgggccggcgagccg
ttcgacgacatcgtcttcgatgccgtgatgtccaccatcgagggcctgccgcgtgcgcgc
cgccgcgatccggatgcgctcggtgaatcggtgcggcgcgccgtccgggcggtgatcaac
gaacattggggcaaaaagcccccctgtctggtacacgtcctgacagtctaa
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