Bradyrhizobium commune: IC761_19780
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Entry
IC761_19780 CDS
T09283
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bcou
Bradyrhizobium commune
Pathway
bcou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IC761_19780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcou03019
]
IC761_19780
03009 Ribosome biogenesis [BR:
bcou03009
]
IC761_19780
Enzymes [BR:
bcou01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IC761_19780
Messenger RNA biogenesis [BR:
bcou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IC761_19780
Ribosome biogenesis [BR:
bcou03009
]
Prokaryotic type
rRNA processing factors
IC761_19780
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
QPF88774
UniProt:
A0A7S9D1K0
LinkDB
All DBs
Position
4202996..4206118
Genome browser
AA seq
1040 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEEQAHREAEEESENRSHGRRRSRHRNAR
RRGHGERVRSDIVESLDAGADPATQPVEGQALPEHAEGALHEGEHLQADADHHGEHDGHD
HHDHDHHDHDHDEHGHDDHHHAHDDEHAHDHDDHGHDGEHDHYDHDHADATPAPVAAFGA
EPAVASEVVAEPHEVSATEAHAEALAEAVTSVTEPADAVYAAGETAEAPHQEAEAATDED
DDEEDEDGEEAEEEHVESVGGDDVLEEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEER
GNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIIL
RTAGAARTKPEIKRDFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDE
IQVAGEAGYREARDFMKMLMPANVSAVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGG
YVVINQTEALVSIDVNSGRSTREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFID
MDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTDPCPHCGG
TGHVRSVSSVALQLLRGLEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLENGFKVT
LSVIADPSVSGPQAYLIDRGEQVHTLEAAKALLAAQAATTPPPMAEETYDDEEFDPELES
EIETEETEGLAEEQAAGDAAPEGDGQRRRRRRRRRGRGGQRDGELREDSAPTLPEAAAVP
AGEGDEDADTEQDGEEAEEQAARGEQQGGSERRRRRGRRGGRRRRGGGEDGLAGSIGDEL
GGNQPSEATDAVADFDSSGGETAPSIAQSEHIAPVEPQVSEPEPRAEVQAEAPARPAPVS
AVAEEEPAVDEKAARRRSTVREKVSFLSSSPSEPAAPIASAPEPVAAPATAPEAAPEAAT
ETPAAPRRAGWWSRRFGGGE
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttgatcgatgccacccacccggaagagacccgggttgtcgtggtc
cgcggcaatcgcgtcgaagagtttgatttcgagaccgcgcaacgcaagcaactgcgcggg
aatatctacctcgccaaggtcacaagggtcgaaccctcgctccaggccgccttcgtcgaa
tatggcggtaaccgccacggcttcctcgccttcagcgaaatccatcccgactactatcag
ataccggtcgccgaccggcaggcgctgatcgaggccgaggagcaggcgcatcgcgaagcc
gaggaagagagcgagaaccgctctcacggccgccgccgctcgcgccaccgcaacgcccgc
cgccgcggtcatggcgaacgcgtccgcagcgacatcgtcgagagcctcgacgccggtgcc
gatcccgccacccagccggtcgaaggccaggctctgcccgagcacgccgagggcgctctg
catgagggcgagcacttgcaagccgacgcggaccatcacggcgagcacgacggccacgat
catcacgaccacgatcatcatgaccatgatcatgacgaacatggccatgacgatcatcat
cacgcccatgatgacgagcatgctcacgatcatgacgaccatggtcatgacggcgagcac
gaccattacgaccatgatcatgccgacgcgacacccgcgcctgtggcggcctttggtgcc
gaacccgcagtcgcaagcgaggttgttgccgagcctcacgaagtctccgcgacggaagcc
catgccgaggctctcgccgaagccgtgacgtccgttaccgaaccggccgatgccgtctac
gccgctggcgagaccgccgaggcgccgcatcaggaggccgaagcggcgactgacgaggac
gacgacgaggaggacgaagacggcgaggaagccgaagaagaacacgtcgaatccgtcggc
ggtgacgacgtgctcgaggaagtgccggagcgcaccttccgtccgcgccgccagtacaag
atccaggaagtcatcaagcgccgccaggtcatgctggtgcaggtggtcaaggaagagcgc
ggcaacaagggcgcggcgctgacgacctatctgtcgcttgccggccgctatgccgtgttg
atgccgaacaccgcccgcggcggcggcatcagccgcaagatcacctcggcccaggaccgt
tcgcgcctgaaggaagtggtgcaggatctcgacgtgcccgagggcatgggcatcatcctg
cgcaccgcaggcgcggcccgcaccaagcccgaaatcaaacgcgatttcgaatacctgatc
cggatgtgggagacggtgcgcgatctgacgctgaagtcgcaggccccgacgctggtctat
gaggaaggctcgctgatcaagcgctcgctgcgcgacctctacaacaaggagatcgacgag
attcaggtggccggtgaagccggctaccgcgaagcgcgcgacttcatgaagatgctgatg
cccgccaatgtcagcgcggtgaagcagtatcgcgacggccagccgctgttctcgcggatg
ggtgtcgaaagccagttggacgcgatgttctcgccgaccgtgcaactgcgttccggcggc
tatgtcgtgatcaaccagaccgaagcgctggtctcgatcgacgtcaactccggccgttcg
acgcgcgagcaccatatcgaggacaccgcgctcaagaccaatctggaagcggccgaagag
gtcgcccgccagcttcgcctgcgcgacctcgccggcctgatcgtcatcgacttcatcgac
atggacgagaagcgcaacaaccgcgcggtcgagcgcaagctgtccgattgcctcaggcag
gatcgcgcgcgcatccaggtcggccgcatctcgcatttcggcctcttggagatgtcgcgc
cagcgcatccgcgccagcgtgctcgagagctccaccgatccctgcccgcattgcggcggc
accggccacgtccgttcggtttcctcggtcgcgctccagctcttgcgcgggctcgaagag
atcctgatgaagggcgcgacccacaatctcgtggtccgcacccgcaccgacgttgcgctc
tatgtgctgaaccacaagcgcggccatctgcgcgatctcgaaaacggcttcaaggtcacg
ctgtcggtcatcgccgaccccagcgtcagcggaccgcaggcttatctgatcgaccgcggc
gagcaggtgcatacgctcgaggccgccaaggcgctgcttgcagcgcaggccgctacaacc
ccaccgcccatggccgaagagacctatgacgacgaggagttcgatccggaactggaatcc
gagatcgagaccgaagagaccgaaggtcttgccgaggagcaggccgcaggcgatgccgcg
cccgaaggggatggccagcgccgcaggcgccgtcgccgccgccgcggccggggtggtcag
cgcgatggcgagcttcgcgaggatagcgcgcccacacttcccgaggcggcggccgtgcct
gctggtgaaggtgacgaggatgccgacaccgagcaggatggcgaggaagccgaggaacag
gccgcccgcggcgagcagcagggcggcagcgaacgtcgtcgccggcgcggtcgtcgcggt
ggacgtcgtcggcgcggtggcggcgaggacggtctcgccggatcgatcggcgacgagctc
ggcggcaatcagccgtcggaagcaaccgatgctgtcgccgatttcgacagctccggaggc
gagactgcgccctcgattgcgcagtccgaacacatcgccccggtcgaaccacaagtctcc
gagccggagccccgcgccgaggtccaggctgaagcgccagcccggcccgcaccggtctcc
gctgtcgccgaggaagagcccgcggtcgacgaaaaggctgcccgccgccgctcgaccgtt
cgcgagaaggtgagcttcctgtcgagctcgccgagcgagcccgcagcgccaattgcttct
gcgcccgaacccgttgctgcgccggcgacggcgccagaggcggcaccggaagcggcaacc
gaaacgccggccgctccgcgtcgcgccggctggtggtcacgccgcttcggcggtggcgaa
tag
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