Burkholderia cepacia GG4: GEM_0650
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Entry
GEM_0650 CDS
T02205
Name
(GenBank) DNA-directed RNA polymerase specialized sigma subunit
KO
K03092
RNA polymerase sigma-54 factor
Organism
bct
Burkholderia cepacia GG4
Pathway
bct02020
Two-component system
bct02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bct00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GEM_0650
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GEM_0650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bct03021
]
GEM_0650
Transcription machinery [BR:
bct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GEM_0650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_Crp_2
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AFQ47099
LinkDB
All DBs
Position
1:complement(719170..720675)
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AA seq
501 aa
AA seq
DB search
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAIAQNPLLENDDEWIASPLRV
AADGSLIAQTPPAQSTESSVGNSSSQSSDRAERDEPAAADEYDGYASSDAGDGPQWNLDE
FGRSSGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQASPRDRALVMFLIESLDDDGYLT
ATLDEVLADLPSELEIDCDEMNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKQLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPD
IIVKKAGQGWLAELNPEVMPRLRINNLYANILRNSRGDPAAGSLKQQLQEARWLIKNIQQ
RFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLGLHESTVSRVTTGKYMLTPFG
TLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccagccttcaactccgcctgtcgcaacacttggcgctgacgccgcaactgcag
cagtcgatccggcttctgcagttgtcgacgctcgaactgcagcaggaagtcgcgatggcc
atcgcgcagaatccgctgctcgagaacgacgacgaatggatcgcgagtccgctgcgtgtc
gcggcggacggatcgctgatcgcgcagacgcctcccgcacagagcaccgaatcgtccgtc
gggaacagcagcagccagtcgagcgatcgcgccgagcgcgacgaaccggctgccgccgac
gaatacgacggatacgcatcgagcgacgccggcgacggcccgcagtggaatctcgacgaa
tttggccgctcgagcggcgcgtcggacgacgacgacctcccgccgctgcaggtgcaggaa
gccgcgacgtcgctgcgcgaccacctgtccgcgcaactgcgcgtcacgcaggccagcccg
cgcgatcgcgcgctcgtgatgttcctgatcgaatcgctcgacgacgacggctacctgacc
gccacgctcgacgaagtgctcgccgatttgccgtcggaactggaaatcgactgcgacgag
atgaacgcggcgctcgcgctgctgcacagtttcgatccggccggggtcggggcccgctcg
gcatccgaatgcctgaagctgcagttgctgcgcctcgatccgtcccccacccgcacgctc
gcgctcgagatcgtgtcgcagcatctcgaactgctcgccgcgcgggacttcacgcggctg
cgcaagcagctgaaggcgagcgacgacgcgctgcgcgacgcgcatgcgctgatccgctcg
ctggagccgttccccggcgccgcctacggcaaggccgaggccgactacgtcgtgcccgac
atcatcgtgaagaaagccggccagggctggctcgcggaactcaatccggaagtcatgccg
cgcctgcggatcaacaacctgtacgcgaacatcctgcgcaacagccgcggcgatccggcg
gccggatcgttgaaacagcagctccaggaagcacgctggctgatcaagaacatccagcag
cgattcgacacgatcctgcgcgtcgcgcaggctattgtcgaacgtcagaagaatttcttt
gcgcacggtgaaattgccatgcgccccttggttttgcgggaaatagctgatacgctgggc
ctacacgagtcaactgtcagccgtgtgacaactggcaagtacatgctgaccccgttcggg
acgcttgaatttaagtacttcttcggatcacacgtttcgaccgacaccggaggcgccgca
tcgtcgaccgccatccgagccctgatcaagcaactgataggagctgaagacccaaaatcg
ccactttcggacagccgcattgccgagctgctggcagaacagggattcgtggttgcgcgc
cgcacggttgccaagtatcgcgaagccctcaagatcccggcagtgaatctgcgcaagtct
ctttaa
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