Burkholderia cepacia GG4: GEM_0767
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Entry
GEM_0767 CDS
T02205
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bct
Burkholderia cepacia GG4
Pathway
bct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEM_0767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bct03019
]
GEM_0767
Enzymes [BR:
bct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GEM_0767
Messenger RNA biogenesis [BR:
bct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GEM_0767
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Ric8
SNF2-rel_dom
Sacchrp_dh_NADP
CMS1
Cas3-like_C_2
DegT_DnrJ_EryC1
CARD_2
Motif
Other DBs
NCBI-ProteinID:
AFQ47216
UniProt:
A0A9W3P898
LinkDB
All DBs
Position
1:complement(848582..850051)
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AA seq
489 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAEHRGAKRAIRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP
ERQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPTAKPEPIQQRRGQQPRGGGGGGGGGGGGGGGGNRQPRAG
GSGQPAAKRDGNNAQPKAAKAAKPRTAGGTSGNANSGGRPSGGNSARPANGNAAHANRNR
SSRSGQRGH
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcctggccgaaccgctcgtcaaggcggtcaacgagctcggc
tacacgtcgccgacacccatccagcagcaagcgatccctgccgtcctcggcggcggcgac
ctgctcgccggcgcacagaccggcaccggcaagaccgccggcttcacgctgccgatcctg
cagcgcctgcacacgttctacgccgagcatcgcggcgcgaagcgcgcgatccgcgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtgcgcgcatacagc
aagtacctgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcactcaagcgcggcgtcgacatcgtcgtcgcgacgccggggcgcctgctcgatcac
atgcagcagaagacgatcgacctgtcgaacctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
gagcgccagaacctgctgttctcggcgaccttctccgacgagatcaaggcgctcgccgac
aacctgctcgattcgccggcgctgatcgaagtcgcgcgccgcaacaccaccgcggaaagc
gtcgcgcagaagatccacccggtcgaccgcgatcgcaagcgcgagctgctcacgcacctg
atccgcgaacacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggctcgccgaacagctgacgaaggacggcatcagcgcgatggccatccacggcaacaag
agccagtcggcacgcacgcgcgcgctcgcggaattcaagaacagcacgctgcaggtgctg
gtcgcgaccgacatcgccgcacgcgggatcgacatcgaccagctgccgcacgtcgtcaac
ttcgacctgccgaacgtgcccgaggattacgtgcaccggatcggccggacgggccgcgcg
ggcgcgaccggcgaagccgtgtcgctcgtgtgcgtcgacgagaagcagctgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcgcgggcttcgaacccgat
ccgaccgcgaagccggagccgatccagcaacgccgcgggcagcagccgcgcggcggcggc
ggcggcggcggcggcggcggcggcggcggtggcggcggcaatcgccagccgcgtgcaggg
ggctcaggccagcctgccgcgaagcgcgacggcaacaacgcgcagccgaaggccgcgaag
gcagccaagccgcgcacggccggcggcacgagcggcaacgccaacagcggcggtcgtccg
tccggcggcaacagcgcgcgtcccgccaacggcaatgccgcgcatgcgaaccgcaaccgt
tcgtcgcgcagcggccagcgcggtcactga
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