Burkholderia cepacia GG4: GEM_1090
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Entry
GEM_1090 CDS
T02205
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bct
Burkholderia cepacia GG4
Pathway
bct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEM_1090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bct03019
]
GEM_1090
Enzymes [BR:
bct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GEM_1090
Messenger RNA biogenesis [BR:
bct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GEM_1090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AFQ47536
UniProt:
A0A9W3P8H7
LinkDB
All DBs
Position
1:1192196..1193920
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AA seq
574 aa
AA seq
DB search
MAAQCYNTPLSAGIRAERSPHGLWRPMFESNRSQAPERRRAARRGSVYFRIVMSAGPAGL
THDVPAAPFERNATMSDSVAKPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVL
AGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAAN
VHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILV
LDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSN
STNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIVFCNSKIGASRLARNLERDGVVASA
IHGDKTQIERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIG
RTGRAGATGDALSLCSPNERKQLADIEKLIKRPLDVQTLALDKPARHRHEERGGERGGER
GGDRGGERGGERGGRRERDEHRGASARRSGGSERGHHRRHEAPVDDFFLKPYEPSAPAKQ
PEETQSAQQPEKKGPKRQVAALLGGFGMPRKPSA
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcagtgctacaatacgcccctttccgccggcattcgcgccgaacggagtccg
cacggcctgtggcgcccgatgttcgaatcgaaccggtcccaagcgccagagcggcgccgc
gcggcgcgccgcggctccgtctacttccgaattgtgatgagcgcaggcccggccggcctg
acgcacgatgtccccgccgcgccttttgagcgaaacgccaccatgtccgattctgtcgcc
aagccagtcgacgcaaccttcgatcaattcggccttgccgccgatatcctgaaagccatt
gcggagcagggctatacgacgccgacgccgatccaggcgcaggccattccggtcgtgctc
gccggccgcgacgtcatgggcgccgcgcaaacgggcaccggcaagaccgcgagtttctcg
ctaccgatcatccagcgcctgctgccgcaggccaacacgagcgcgtccccggcgcgccac
ccggtgcgtgcgctgatcctcacgccgacccgcgaactcgccgaccaggtcgccgcgaac
gtgcacgcgtatgcgaagcacacgccgctgcgcagcgcggtcgtgttcggcggcgtcgac
atgaacccgcagatggccgagctgcgccgcggcgtcgagatcctgatcgcgacgccgggc
cgcctgctcgaccacgtgcagcaaaagacggccaacctcggccaggtccagatcctggtg
ctcgacgaagccgaccggatgctcgacatgggcttcctgcccgatctgcagcgcatcctg
aacctgctgccgaaggagcgccagacgctgctgttttcggccacgttctcgggcgaaatc
aagaagctcgcatcgacctatctgcgcaatccgcagacgatcgaggtcgcgcgcagcaac
tcgaccaacgcgaacgtcacgcagatcgtctacgacgtcgccgaaggcgacaagcaggct
gccgtcgtgcagctgctgcgcgatcgcgggctcaagcaggtgatcgtgttctgcaacagc
aagatcggtgcgagccggctggcccgcaacctcgagcgcgatggcgtggtcgcgtctgcg
atccacggcgacaagacgcagatcgagcggatgcaggcgctcgacgcattcaagcgcggc
gagatcgaggcgctggtcgcgaccgacgtggccgcgcgcggtctcgacatcgccgaactg
ccggccgtgatcaacttcgacctgccgttcagcgcggaagactacgtgcaccggatcggc
cgcacgggccgcgcgggcgcgacgggcgatgcgctgtcgctgtgcagcccgaacgagcgc
aagcagctcgccgatatcgaaaagctgatcaagcggccgctcgacgtgcagacgctcgcg
ctcgacaagccggcgcgccatcgtcacgaagagcgcggcggcgagcgcggtggtgaacgc
ggcggtgaccgcggtggtgagcgtggcggtgaacgtggtggccggcgcgagcgcgacgag
catcgcggtgcgtcggcgcgtcgttcgggcggttccgagcgcggccatcaccgtcgccac
gaggcgccggtcgacgatttcttcctgaagccgtacgaaccgtcggcgccggcgaagcag
ccggaagagacgcagtccgcgcagcagcccgagaagaaggggccgaagcgtcaggtcgcc
gcgctgctcggcgggttcgggatgccgcgcaagccgtcggcgtaa
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