Burkholderia cepacia GG4: GEM_1884
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Entry
GEM_1884 CDS
T02205
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bct
Burkholderia cepacia GG4
Pathway
bct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEM_1884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bct03019
]
GEM_1884
03016 Transfer RNA biogenesis [BR:
bct03016
]
GEM_1884
Enzymes [BR:
bct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GEM_1884
Messenger RNA biogenesis [BR:
bct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GEM_1884
Transfer RNA biogenesis [BR:
bct03016
]
Prokaryotic type
tRNA degradation factors
GEM_1884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
WHD_RNase_R
CSD
Motif
Other DBs
NCBI-ProteinID:
AFQ48306
UniProt:
A0A9W3P9C8
LinkDB
All DBs
Position
1:complement(2040627..2043083)
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AA seq
818 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKAKVGQVV
VVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQPALDEAAALPDKV
RPADLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPTKVGRGDGFRLIVAIADVSHYVQPG
NGLDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMVITARGEIKAYQ
FYPAVIHSAARLTYTEVAAVLSNTKGPEAARRADLLPHLQDLYGVYKALFAARQKRGAID
FDTTETYIVCNSQGKIEQIVPRQRNDAHKLIEECMLAANVCAADFLKRNKHPGLYRVHAG
PTPEKLENLRAFLRGMGLSLGGGDKPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILSGKKYAPKAPDGFELNTALSPR
ARAMQQADDEARGRSRSNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKAPRPAPAPAAAGNDRGGPRVRALPPAEESAPRRKKA
PGAPTVAVKEARAARAAKKKGGVAVKTAAKKTHARKKY
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccgtaccccattccgagccgtgaagaaattctcggcgtgctgcgtacg
agcgacgcgccgctggccgccaacgacatcgccgaggcgctgtcgatcaagcgtcaggag
cgcgaggggttcttccggcgtgtcgccgcgatggaacgcgacggccagatccgcctcgac
aagcgtggccactaccagctcacccatccctcgaatttcgttgccggtcgcgtgcaaggg
catcgcgacggctacgggttcgtgatccgcgatgacggccaggacgacctgtttttgccg
aacggcgaaatgcagaaggtgatgcacaacgatcgcgtgctcgcgcggatcgtcggctac
gatcgccgcggccgcccggaagggcacgtcgtcgaggtcaccgagcgcgcgaacaagcgc
gtgatcggtcgcctgctcaacgagaacggcgcactgatcgtcgcccccgaagacaagcgc
atcggccacgacatcctgatcacgcagaacgtgaagaaggcgaaggtcgggcaagtcgtc
gtcgtcgaactgaccgacttcccgagccgtcattcgcaaccgctcggccgcgtcgtcgaa
gtgctcggcgacatcgacgatccgggcatggaaatcgagatcgcggtgcgcaagtacggc
gtgccgcatgaattcagccagccggcgctcgacgaagccgccgcgctgccggacaaggtg
cggccggccgacctgcgcttccgcgtcgatctgcgcgacgtgccgctcgtgacgatcgac
ggcgaggacgcccgcgacttcgacgatgcggtgtactgcgagccgaccaaggtcggccgc
ggcgacggcttccgcctgatcgtcgcgatcgccgacgtttcgcactacgtgcagccgggc
aacggcctcgacgccgacgcgctcgagcgcagcacgtcggtctattttccgcggcgcgtg
atcccgatgctgccggagaagctgtcgaacggcctgtgctcgctgaatccgcaggtcgac
cgctgcgtgctcgcatgcgacatggtgattaccgcgcgcggcgagatcaaggcgtaccag
ttctatccggcggtcatccattcggccgcccgtctgacgtacaccgaagtcgcggccgtg
ctgtcgaatacgaaggggccggaggccgcgcgccgcgcggatctgctgccgcacctgcag
gacctgtacggcgtctacaaggcgctgttcgccgcacggcagaagcgcggcgcgatcgac
ttcgatacgaccgagacatacatcgtctgcaactcgcagggcaagatcgaacagatcgtg
ccgcgtcagcgtaacgatgcgcacaagctgatcgaggaatgcatgctggccgcgaacgtg
tgcgcggccgacttcctgaagcgcaacaagcatcctggcctgtaccgcgtgcatgccggc
ccgacgccagagaagctcgagaacctgcgcgcgttcctgcgcggcatgggcctgtcgctc
ggcggcggcgacaagccgcacgcgagcgactatgcggcgctgatggcgcagatccgcgac
cggcccgacgcgcagatgctgcagccgatgctgctgcgttcgatgcagcaggcggtctac
agcccggacaacatcggccacttcggtcttgcctacgaggcatacgcgcacttcacgagc
ccgatccgccgctatcccgacctgcttacgcaccgcgcgatctacgcgatcctgtcgggc
aagaagtacgcgccgaaggccccggacggcttcgagctgaacaccgcgctgtcgccgcgc
gcccgcgcgatgcagcaggccgacgacgaagcgcgcggccgttcgcgctcgaacacggcg
atctgggaagagctcggcctgcactgctcggcgaacgagcggcgtgccgatgaagcgtcg
cgcgacgtcgaggcctggctcaagtgctacttcatgcgcgacaagctcggcgaggagtat
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgatacgctgttc
atcgaagggctcgtgcacgtcacggaactcggctcggactatttccagtacgacgagatc
aagaacgagctgcgcggcgagcgcacgggcatccgttatcgcctgtcggatcgcgtgcgc
gtgcaggtgagccgcgtcgatctcgacgcgcgcaagatcgacttccgcctcgtgcgcgac
acgccggtgaaggcgccgcgtccggcaccggcgccggctgccgccggtaacgatcgtggc
ggcccgcgcgtgcgcgcgttgccgccggcagaggaatccgcaccgcgtcgcaagaaggcg
cccggcgcgccgaccgttgcggtgaaggaagcgcgtgccgcacgtgctgcgaagaagaag
ggcggcgtggcggtgaaaactgccgcgaagaagacacacgcccgcaagaagtattga
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