Burkholderia cepacia GG4: GEM_2408
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Entry
GEM_2408 CDS
T02205
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bct
Burkholderia cepacia GG4
Pathway
bct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEM_2408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bct03019
]
GEM_2408
03009 Ribosome biogenesis [BR:
bct03009
]
GEM_2408
Enzymes [BR:
bct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GEM_2408
Messenger RNA biogenesis [BR:
bct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GEM_2408
Ribosome biogenesis [BR:
bct03009
]
Prokaryotic type
rRNA processing factors
GEM_2408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AFQ48817
UniProt:
A0A9W3K522
LinkDB
All DBs
Position
1:2642898..2646065
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AA seq
1055 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPER
PAPSPAPQRPAEPVAAPAPVAVASGGFIGWLKGLFGMSPAPAPAPVAPAPAKEQAARPAR
ERTEKTDQRGGDRNRNRRGGAQQAQGGRDQAAAGRGQPQRQEREGKELREPREPREGREP
REGRELREGREPRESREGREGREGRGPREGREGREGREPREPREGREPREPRESREPREN
REPRERTEQSEAVEAAGRGERRERGERRKPTQHAATLETVTRGENHPEAEADQAAVAALP
GDDVAADAEAGARDGEERRRRRRGRRGGRREREDEGAAVDHAEQDADGEAAVQAVTTEAQ
GAGEPAHAAAVAAVAAAGAVVAEAAIEQRAEPVAPAAVEPQPAPVRVEATPVAPLEPAVV
AQAAEPAPVAPASAPEAGPAPVAVSPTDAFEVPAVPAAVEAPQSAPVEQAAPAPVVAVEV
APVAVEPAHVEAAPVEAVAAPVSAPVQPVAAPASASLDVVLEQAGLVWVNTDADKFRAAQ
EAASHLPRTARVPRERKALPPVDSTPMQQVETSHH
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcagaagctcatcgacatcgacatcgagaccgccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcatcacccgtatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcatcgacatgcgctccgcgcgcatccaggatgccctgcgcgaaggccaggaactgatc
gtccaggtcgagaaggaagagcgtggcaacaagggcgccgccctgacgaccttcatctcg
ctcgccggccgctatctggtactgatgccgaacaatccgcgcggcggcggtgtgtcgcgc
cggatcgaaggcgacgagcgccaggaactgcgcgaaaccatggcgcagctgcagattccg
gacggcatgagcatgatcgcccgtaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctgtggcgcgcgatcgaagcggcgtcgcaaagcggc
aacgccggccagccgatgctgatctatctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgatatcggcgaaatcctgatcgacacgaccgagatctacgatcag
gcccgtgcgttcatggacatcgtgatgccggacaacgtgtcgaaggtgaagcgctaccac
gacgacgtaccgctcttctcccgcttccagatcgagcaccagatcgagaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggcgcgtgcgaccaagggcgcggacatcgaggaaacggcaacc
cgcacgaacctcgaagcagcggacgaagttgcccgccagctgcgcctgcgcgacctcggc
ggcctgatcgtgatcgacttcatcgacatggagtcggcgaagagccagcgcgaagtcgag
caacgcctgaaggacgcgctcaagcacgaccgtgcgcgcgtgcagatgggcaagatctcc
cgcttcggcctgatggaactgtcgcgccagcgcctgcgtccggcgctgtcggaaggcagc
cacgtgacgtgcccgcgctgcaacggcaccggccacatccgcgacaccgaatcgtccgca
ctgcaggtcctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgaacgcctgcgccatgacgacgcacgcctcgacgatccgcgcgcg
tcctggaagatggccgaggaagccgcccgcgaactggagtcggaaaccggctacagcaag
cgcgcagccgaagtgaagccgaagcaggaagccgcagtcaagggcatcacgcccgagcgc
ccggccccgagcccggcgccgcagcgcccggccgaaccggttgcggcacccgccccggtc
gccgtggcaagcggcggcttcatcggctggctgaagggcctgttcggcatgtcgccggct
ccggcgcccgcgccggttgcaccggcaccggcgaaggaacaggctgcccgtccggcccgc
gagcggaccgagaagaccgaccagcgcggcggcgatcgcaaccgtaaccgtcgcggcggc
gcccagcaggctcagggtggtcgcgaccaggcagcggcaggccgtggccagccgcaacgc
caggagcgcgaaggcaaggaactgcgcgagccgcgtgaaccccgcgagggtcgtgaaccg
cgtgagggtcgcgaactgcgcgagggtcgcgaaccgcgtgaaagccgcgagggccgcgaa
ggtcgtgagggccgtggcccgcgcgaaggccgcgaaggccgcgaaggccgcgaaccacgc
gagccgcgcgaaggccgcgaaccgcgcgagccgcgcgaaagccgtgagccgcgcgagaac
cgcgaaccgcgcgagcgcaccgagcagtcggaagccgtcgaggctgccggccgcggcgag
cgtcgcgagcgcggtgagcgccgcaagccgacgcagcatgcggctacgctcgagaccgtc
acccgtggcgagaaccatccggaagcggaagccgaccaggccgcagtggctgccctgccg
ggcgacgatgtggctgccgacgcggaagccggcgcacgtgacggcgaggaacgtcgccgt
cgccgccgtggccgccgcggtggtcgtcgcgagcgcgaggacgaaggcgcagccgtcgac
cacgccgaacaagacgcggacggtgaagcggcagtgcaggccgtgacgacggaagcccag
ggcgcgggcgagccggcccatgcggccgccgtggcagccgtagccgcggcaggcgccgtc
gttgccgaagcagcaatcgagcaacgtgccgaaccggttgcaccggccgcggtcgagccg
caaccggcgccggttcgcgtcgaagcgacaccggtcgccccgctcgagcccgccgtggtc
gcccaggcagccgaaccggcaccggtcgcaccggcctccgctccggaagccggcccggct
ccggtcgcggtttcgccgaccgatgcgttcgaagtgccggccgtgccggctgccgtcgaa
gcgccgcagtccgcgcccgtcgagcaagccgcaccggcaccggtcgtcgcagtcgaagtg
gccccggtagccgtcgaaccggctcacgtcgaagctgcaccggtcgaagccgttgccgca
ccggtatcggcacctgtacagccggtcgctgcgcccgcctcggcgagcctcgatgtcgtg
ctggaacaagccggtctcgtgtgggtgaacacggacgccgacaagttccgcgctgctcag
gaagccgcgtcgcacctgccgcgcacggcccgcgtgccgcgcgagcgcaaggcgctgccg
ccggtcgattcgaccccgatgcagcaggtcgaaacgtcgcaccattaa
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