KEGG   Burkholderia cepacia GG4: GEM_4439
Entry
GEM_4439          CDS       T02205                                 
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
bct  Burkholderia cepacia GG4
Brite
KEGG Orthology (KO) [BR:bct00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bct03400]
    GEM_4439
Enzymes [BR:bct01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GEM_4439
    5.6.2.6  RNA 3'-5' helicase
     GEM_4439
DNA repair and recombination proteins [BR:bct03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    GEM_4439
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr WH4_Lhr DEAD Helicase_C WH3_Lhr DprA_WH ResIII HTH_IclR LexA_DNA_bind MarR HTH_24
Other DBs
NCBI-ProteinID: AFQ50829
UniProt: A0A9W3K4P6
LinkDB
Position
2:1390845..1395338
AA seq 1497 aa
MDVTATRPAARALDVFHPAVAAWFRRTFAAPTGAQALAWPHIKAGRSTLVAAPTGSGKTL
TGFLCALDELVRDALAHDGALPDATLVVYVSPLKALSNDIHVNLDAPLAGIAESLAQLGL
PVPAIRTAVRTGDTTQAERAALRKRAPHILVTTPESLYVLLSSTSGRQMLSSVRSVIVDE
IHALASSKRGSHLALSLERLDALAGRALPRIGLSATQKPIDAVARFLVGGPADAPRDCTI
VDTGHTRERDLALELPNVPLEPVMATDVWEQVYDRIAALAAAHRTTLVFVNTRRTAERMA
RHLADRLGKDAIAAHHGSLAKEHRFEAEQRLKRGDLKLLVATASLELGIDIGDVDLVCQV
GSPRGIAPFLQRVGRSGHHVGGVPKGRLFPLSRDELVECAALLDCVQRGELDALRIPEAP
LDVLAQQIVAEVACKEWQEDALYTRFTHAAPYARLPRERFDDVLKMLTEGFTSRRGVRGA
YLHRDVVGGTVRGRRNAMMTATTSGGTIPDMADYAVLLEPQGIQVGTVNEDFAIESLAGD
VFQLGNQSYRIIRVETGRVRVEDAQGQSPSIPFWLGEAPGRSDELSAAVGRLRARLDGLF
ADDDRQVEAGGRTRAGSDAPGTTGTRGKSKKAAEVVADSRGDLDCTAIGPTESRLAPALR
WLVDDLHLAPDAASQIADYLARTRAALGALPTQDTLVMERFFDESGGTQLVIHSPFGSRI
NRAWGLALRKRFCRNFNFELQAAATDDAIILSLSLAHSFALDDVWRYLRSASAEHVLIQA
LLDAPMFGVRWRWNATTALALPRFTGGRRTAPQLQRMKSEDLLATVFPDQVACLENIVGE
REIPHHPLVDQTLDDCLHDAMDTDGWLALLRRIESGAIELVARDLPAPSPLAAEILNAKP
YAFLDDAPLEERRTQAVQSRRWSDPESADDLGALDADAIDAVRDEAWPLVRDADEMHDAL
LTLACVADSEAHQHEGWPERLAELAERRRATQLVTPDGAALWVPVERLVCMRALHPDARV
APARKVPAACAQPWEADAALVDVIRARLTGFGPLTLDAIAQPLGLPPAAIATALAALERE
GYLMRGRFTPGATTDEWCERHLLARIHRYTVKRLRREIEPVERADFMRFLFHWQHLTPDT
RGTGRDALAAVVEQLEGYEAAASAWEDALLPARLTDYTAGGLDELCRSGKLVWTRIGAPA
RAAGTPVKTTPVVLLPRRHLGAWQALRDPDAQPALSARATQVRDALAAHGAMFFDALLDE
LHMLPVELEQALGELVSAGLVNADSFAGLRALLKPAVKRSATYAPRTRRGGALIGGMDDA
GRWALVQRVAPPDDAPAPQRGATATNPDALEHIAWTLLRRYGVVFWRLLEREADWLPSWR
ELVRVMQRLEARGEIRGGHFVAGLAGEQFALPEAIPILRELRRQPGDGQYVCVTGADPLN
LAGTLLPGDKVPALAGNRVLFRDGVPVASLVSGTFHYAADLPPAAREDARLRLARRY
NT seq 4494 nt   +upstreamnt  +downstreamnt
atggacgtcaccgctacccgccctgccgcccgtgcactcgacgtgttccacccggccgtc
gccgcgtggttccgccgcacgttcgccgcaccgaccggtgcgcaggcactcgcgtggccg
cacatcaaggccggccgctcgacgctcgtcgccgcgccgaccggctccggcaagacgctt
accgggttcctgtgcgcgctcgacgaactcgtacgcgacgcgctcgcgcacgacggcgcg
ctgcccgacgccacgctcgtcgtctatgtctcgccgctgaaggcgctgtcgaacgacatc
cacgtgaacctcgacgcgccgctcgccggcatcgccgaatcgctcgcgcagctcgggctg
ccggtgccggcgatccgcaccgccgtgcgcaccggcgataccacgcaggccgagcgtgcc
gcgctgcgcaagcgcgcgccgcacatcctcgtgacgacgcccgagtcgctgtacgtgctg
ctgtcgtcgacgtcggggcggcaaatgctgtcgagcgtgcgttcggtgatcgtcgacgag
atccacgcgctcgcatcgtccaagcgcggcagccatctcgcgctgtcgctcgaacgcctc
gacgcgctggcgggccgcgcgttgccgcgcatcgggttgtcggcgacgcaaaagccgatc
gacgcggtcgcccgcttcctggtcggcggcccggccgatgcaccgcgcgactgcacgatc
gtcgacaccggccatacgcgcgaacgcgaccttgcactcgaactgccgaacgtgccgctc
gaaccggtgatggcaaccgatgtgtgggaacaggtgtacgaccggatcgccgcgctcgcg
gccgcgcatcgcacgacgctcgtgttcgtcaacacgcggcgcaccgcggaacgcatggcg
cgccatctcgccgatcgcctcggcaaggacgcgatcgccgcgcaccacggcagtctcgcg
aaagagcaccgcttcgaagcggaacagcggctgaaacgtggcgacctgaagctgctcgtc
gcgaccgcgtcgctcgaactcggcatcgacatcggcgacgtcgatctcgtctgccaggtc
ggttcgccgcgcgggatcgcaccgttcctgcagcgcgtcggccgttcggggcaccacgtc
ggcggcgtgccgaagggccggctgttcccgctgtcgcgcgacgagctcgtcgaatgcgcg
gcgctgctcgattgcgtgcaacgcggcgagctcgacgcattgcggattcccgaagcgccg
ctcgacgtgctcgcgcaacagatcgtcgccgaggtcgcctgcaaggaatggcaggaggac
gcgttatacacgcgcttcacgcacgccgcgccgtacgcacgcctgccgcgcgaacgcttc
gacgacgtgctgaaaatgctcaccgaaggcttcacgagccgccgcggcgtgcgtggcgca
tacctgcatcgcgacgtggtcggcggcacggtgcgcgggcgccgcaacgcgatgatgacc
gcgacgacgtcgggcggcacgatccccgacatggccgactacgcggtgctgctcgaaccg
cagggcatccaggtcggcaccgtcaacgaggatttcgcgatcgagagcctggccggcgac
gtgttccaactgggcaaccagtcgtaccggatcattcgcgtggaaacgggccgcgtgcgc
gtcgaggacgcgcagggccagtcgccgagcattccgttctggctcggcgaggcgcccggg
cgcagcgacgagctgtcggcggcggtcggccggctgcgcgcgcggctcgacgggctgttc
gccgatgacgaccggcaggtggaagccggtgggcgcacgcgcgcgggcagcgacgcgccc
ggaacgaccggcacacgcggcaagtcgaaaaaggcggccgaagttgtggccgactcgcga
ggcgatctcgactgcaccgcgatcggcccgaccgaaagccgtctcgcgccggcgctgcgc
tggctcgtcgacgatctccatctggcgccggacgcagccagccagatcgccgactacctc
gcgcgcacgcgtgcggcactcggcgcgctgccgacgcaggacacgctcgtgatggagcgt
ttcttcgacgagtcgggcggcacgcagctggtgatccattcgccgttcggcagccgcatc
aaccgcgcgtgggggctcgcgctgcgcaagcgcttctgccgcaacttcaatttcgagctg
caggccgccgcgactgacgacgccatcattctttcgctgtcgctcgcgcacagcttcgcg
ctcgacgacgtgtggcgctacctgcgctcggccagtgccgagcacgtgctgatccaggcg
ctgctggacgcgccgatgttcggcgtgcgctggcgctggaacgcgacgaccgcgctcgcg
ctgccgcgcttcaccggcggccgccgcaccgcgccgcaactgcagcggatgaagagcgag
gatctgctcgcgaccgtgttcccggatcaggtcgcgtgcctcgagaacatcgtcggcgaa
cgcgagataccgcatcacccgctcgtcgaccagacgctcgacgattgcctgcacgacgcg
atggacaccgacggctggctcgcactgctgcgccggatcgaaagcggcgcgatcgaactc
gtcgcgcgcgacctgcccgcgccgtcgccgctcgcggccgagatcctgaacgcgaaaccc
tatgcgttcctcgacgacgcgccactcgaggagcgccgcacgcaggccgtgcaatcgcgc
cgctggagcgatcccgaatcggccgacgatctcggcgcgctcgacgcggacgcgatcgac
gcggtgcgcgacgaagcgtggccactcgtgcgcgatgccgacgaaatgcacgacgcgctg
ctcacgctcgcgtgcgtcgccgacagcgaagcgcaccagcacgaaggctggcccgaacgg
ctcgcggaactggccgaacgccgccgcgcgacgcaactcgtcacgccggacggtgcggcc
ttgtgggtgccggtcgaacggctggtctgcatgcgcgcgctgcatcccgacgcacgcgtg
gcccccgcgcggaaggtgccggccgcgtgcgcgcagccgtgggaagccgacgccgcgctc
gtcgatgtgatccgcgcgcgactcaccggcttcgggccgctgacgctcgacgccatcgcg
cagccgctcggcctgccgcctgcggcgatcgcgacggcgctcgctgcactggaacgcgaa
ggctatctgatgcgtggccgcttcacgccgggcgcgacgaccgacgaatggtgcgaacgc
cacctgctcgcgcgcattcatcgctatacagtgaagcggctgcgccgcgagatcgagccg
gtcgagcgcgccgatttcatgcgcttcctgttccactggcagcacctgacacccgacacg
cgcggcaccggccgcgacgcgctcgcggccgtcgtcgaacagctcgaaggctacgaggcc
gcggcgagcgcatgggaagacgcgctgctgcccgcgcggctgaccgactacacggccggc
ggcctcgacgagctgtgccgctcgggcaagctcgtctggacccgcatcggcgcaccggcg
cgcgcggccggcacgcccgtgaaaacgacgccggtcgtgctgctgccgcgccgccacctg
ggcgcatggcaggcgctgcgcgacccggacgcccaaccggcgctgtccgcgcgcgcgacg
caagtgcgcgatgcactcgccgcacatggcgcgatgttcttcgatgcactgctcgacgaa
ctgcacatgctgcccgtcgagctcgaacaggcgctcggcgaactcgtgtctgccggcctc
gtgaatgcggacagcttcgcgggcctgcgcgcgctgctgaaacccgcggtcaagcgcagc
gcgacgtatgcgccgcgcacgcggcgcggcggtgcgctgatcggtggaatggacgacgcc
ggccgctgggcgctggtgcaacgcgtggcgccgccggacgatgcgccggcgccgcaacgc
ggtgcgaccgcgaccaatcccgatgcgctcgaacatatcgcgtggacgctgctacgccgc
tatggggtggtgttctggcggctgctcgaacgcgaagccgactggctgccgagctggcgc
gaactcgtgcgcgtcatgcagcgcctcgaagcgcgcggcgagattcgcggcgggcacttc
gtcgccgggctcgcgggcgagcagttcgcgctgccggaagcgatcccgatcctgcgcgaa
ctgcgtcgccaaccgggcgacggccagtacgtgtgcgtgacgggcgccgatccgctgaac
ctcgccggcacgctgctgcccggcgacaaggtgcccgcgctggcgggcaatcgcgtgctg
ttccgcgatggcgtgcccgtcgcgtcgctcgtgtcgggcacgttccactacgccgctgac
ctgccgcccgccgcgcgcgaggatgcgcgcctgcgactcgcgcgccgctactga

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