Burkholderia cepacia GG4: GEM_4864
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Entry
GEM_4864 CDS
T02205
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bct
Burkholderia cepacia GG4
Pathway
bct02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bct00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GEM_4864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bct03021
]
GEM_4864
Transcription machinery [BR:
bct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GEM_4864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
KIND
Motif
Other DBs
NCBI-ProteinID:
AFQ51251
UniProt:
A0A9W3PC30
LinkDB
All DBs
Position
2:complement(1883168..1885219)
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AA seq
683 aa
AA seq
DB search
MTKKLNEVSVDDDANQSDEQPAAAAAPGKSKVRDRRAKEKALLKEAFATSTPGTAEELEE
RRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPDAET
LLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIA
KRIEDGLRHMVMAISACPTTIADILAMAERVANEEIRVDELVDGLLDPNASDSADTDGFS
AKEAEAIENEDEEAEEEEEEEEEEEDDGAAQASANAAQLEALKRASLDKFSQISEWFDKM
RRAFEKEGYKSKSYLKAQETIQTELMTIRFTARTVERLCDTLRAQVDEVRQVERQILHIV
VDKCGMPRSEFIARFPGSETDLDWAEKVTAEGHAYSAVLTRNVPAIREQQQRLIDLQARV
VLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIG
LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQIL
QETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTVAP
ADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIE
AKALRKLRHPSRSDKLKSFLEGN
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaaagctgaacgaagtatccgtcgatgacgacgcaaatcagagcgacgagcag
cctgcagccgcggctgctccgggcaaatccaaggtgcgcgatcgtcgcgccaaggaaaag
gcgctgctgaaggaagcgttcgcgacgagcacgccgggcacggccgaggagctcgaagag
cgccgcgtgaaactgcgcgcgctgatcaagctcggcaaggagcgcggcttcctcacgtat
gccgaaatcaacgaccacctgccggacaacttcaccgagaccgaagccctcgaaggcatc
atcggcacgttcaacgacatgggcgtggcggtttacgagcaggcgccggacgcggaaacg
ctgctcttgaacgacaacgcgccggccgcgtcgtcggacgatgaagtcgaggaagaagcg
gaagtcgcgctgtcgaccgtcgattcggaattcggccgcacgaccgatccggtccggatg
tacatgcgcgagatgggcacggtcgagctgctcacgcgcgaaggcgaaatcgagatcgcg
aagcggatcgaggacggcctgcgccacatggtgatggcgatttccgcatgcccgacgacg
atcgcggacatcctcgcgatggccgaacgcgtcgcgaacgaagagatccgcgtcgacgaa
ctcgtcgacggcctgctcgatccgaatgcttcggactccgccgacaccgacggcttctcc
gcgaaggaagcggaagccatcgagaacgaggacgaggaagccgaagaggaagaggaagaa
gaggaagaggaggaggacgacggtgccgcgcaggcgtcggccaacgccgcccagctcgaa
gccctcaagcgtgcgtcgctcgacaagttctcgcagatcagcgagtggttcgacaagatg
cgccgcgcgttcgagaaggaaggctacaagtcgaagtcctacctgaaggcgcaggaaacg
atccagaccgagctgatgacgatccgcttcaccgcgcgtaccgtcgagcgtctgtgcgac
acgttgcgtgcgcaagtggacgaagtgcgtcaggtcgagcgtcagatcctgcacatcgtc
gtcgacaagtgcggcatgccgcgttcggaattcatcgcgcgcttcccgggcagcgagacg
gatctcgactgggccgagaaggtcacggccgaaggccatgcgtacagcgcggtcctgacg
cgtaacgttccggcgatccgcgaacagcagcagcgtctgatcgacctgcaggcgcgcgtc
gtgctgccgctgaaggacctgaaggaaaccaaccgccagatggcggccggcgaactgaag
gcgcgccaggcgaagcgtgaaatgaccgaggcgaacctgcgtctcgtgatctcgatcgcg
aagaagtacacgaaccgcggcctgcagttcctcgacctgatccaggaaggcaacatcggc
ctgatgaaggcggtggacaagttcgaataccgtcgcggctacaagttctcgacctatgcg
acgtggtggattcgccaggccatcacgcgttcgatcgcggaccaggcgcgtacgatccgt
attccggttcacatgatcgaaacgatcaacaagatgaaccgcatctcgcggcagatcctg
caggaaaccggtctcgagccggatccggcaacgctcgccgagaagatggagatgccggaa
gacaagatccgcaagatcatgaagatcgcgaaggagccgatctcgatggaaacgccgatc
ggtgacgacgacgattcccatctcggcgacttcatcgaggacaacaacacggtcgcgccg
gcggatgccgcgctgcatgcaagcatgcgcgacgtcgtgaaggacgtgctcgattcgctg
acgccgcgcgaggcgaaggtgctgcggatgcgcttcggcatcgagatgagcaccgatcac
acgctcgaggaagtcggcaagcagttcgacgtcacgcgtgagcggatccgtcagatcgag
gccaaggcgctgcgcaagctgcgtcacccgagccgttccgacaagctgaagtcgttcctc
gaagggaactga
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