Burkholderia cepacia GG4: GEM_5070
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Entry
GEM_5070 CDS
T02205
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bct
Burkholderia cepacia GG4
Brite
KEGG Orthology (KO) [BR:
bct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bct03016
]
GEM_5070
Enzymes [BR:
bct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GEM_5070
Transfer RNA biogenesis [BR:
bct03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GEM_5070
Prokaryotic type
tRNA splicing ligases
GEM_5070
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AFQ51456
UniProt:
A0A9W3PCB4
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All DBs
Position
2:2104774..2106009
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AA seq
411 aa
AA seq
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MVKPMSDNDYQVMELANGKPVKMWTQGVAVEDDARTQLRNTAQMPFIFRHVAVMPDVHLG
KGSTIGSVIPTKGAIIPAAVGVDIGCGMMAARTTLAASDLPDALGGLRSAIERAVPHGRA
PGRRDPGAWGDRTPAAVTESWKSLLPGFQRIVAKYPKLEKTNHYAHLGTLGTGNHFIEVC
IDETDHVWFMLHSGSRGVGNAIGSLFIELAQADMRQHIANLPDRNLAYFTEGSRHFDDYV
AAVGWAQDYARRNRQAMMDAVIGAARSVIGKPFAVDEHAVNCHHNYVQRERHFGEDVLVT
RKGAVSAQKGQLGIIPGSMGAKSFIVRGLGNPESFCSCSHGAGRAMSRTEAKRRFTVDDQ
VNATRGVECRKDAGVVDEIPMAYKDIDAVMAAQRSLVEVVHTLRQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccaatgagtgacaacgattatcaggtgatggaactggcgaacggcaagccg
gtgaagatgtggacgcaaggcgtcgccgtcgaggacgacgcgcgcacgcaattgcgcaac
accgcgcagatgccattcatcttcaggcacgtcgcggtgatgccggacgtccacctcggc
aagggctcgacgatcggcagcgtgatcccgacgaagggcgcgatcatcccggccgcggtc
ggcgtcgacatcggctgcgggatgatggccgcgcgcacgacgcttgcggcatccgacctg
ccggacgcgctcggcgggctgcgcagcgcgatcgaacgcgcggtgccgcatgggcgcgcg
ccgggccgccgcgacccgggtgcgtggggcgatcgcacgccggccgccgtgaccgagtcg
tggaagtcgctgctgccgggtttccagcggatcgtcgccaagtatccgaagctggaaaag
acgaaccactacgcgcatctgggcacgctcggcaccggcaaccacttcatcgaggtgtgc
atcgacgaaaccgaccacgtgtggttcatgctgcacagcggctcgcgcggtgtcggcaac
gcgatcggcagcctgttcatcgaactcgcgcaggccgacatgcggcagcacatcgcgaac
ctgccggatcgcaacctcgcgtatttcaccgagggcagccggcacttcgacgattacgtc
gcagcggtcggctgggcgcaggactacgcgcgccgcaaccggcaggcgatgatggacgca
gtgatcggcgcggcgcgcagcgtgatcggcaagccgttcgcggtcgacgagcacgcggtg
aactgccaccacaactacgtgcagcgcgaacgccacttcggcgaggacgtgctcgtgacc
cgcaagggcgcggtgtccgcgcagaaggggcagctcgggatcattccgggttcgatgggc
gcgaagagcttcatcgtgcgcgggctcggcaacccggaaagcttttgctcgtgcagccac
ggcgccggccgcgcgatgagccggaccgaggcgaagcgccgcttcacggtcgacgaccag
gtgaacgcgacgcgcggggtcgaatgccgaaaggacgcaggcgtcgtcgacgagatcccg
atggcctacaaggacatcgacgcggtgatggcggcgcagcgcagcctcgtcgaggtggtg
catacgctgcgtcaggtggtgtgcgtaaagggatag
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