Beutenbergia cavernae: Bcav_1618
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Entry
Bcav_1618 CDS
T00893
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bcv
Beutenbergia cavernae
Pathway
bcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bcav_1618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcv03019
]
Bcav_1618
03009 Ribosome biogenesis [BR:
bcv03009
]
Bcav_1618
Enzymes [BR:
bcv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Bcav_1618
Messenger RNA biogenesis [BR:
bcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bcav_1618
Ribosome biogenesis [BR:
bcv03009
]
Prokaryotic type
rRNA processing factors
Bcav_1618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
DUF5351
Motif
Other DBs
NCBI-ProteinID:
ACQ79874
UniProt:
C5C3H5
LinkDB
All DBs
Position
1862225..1865059
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AA seq
944 aa
AA seq
DB search
MSEPTNEAPTNDEPTEAAPAPRRRGPRRASRGVTTPVAPDPAVEAAAPEPEPEPAPVPAP
EPEAPPEPSAEPADAEVPVEDDAPPSRATFSHAAPPAPERDADQRLDVFAAFGIGAQAAT
PEPAAADEVVPAPEPAAADEDDEELPEGAEDAEDGPRLPATALLFQAPEPRARSRRRASS
PAGPPSPEDAGERPASPEHVDAPSEAAASDAPEAAERPKRRKRRKSGGSAEPEAPEKTED
AEQAATAAPDEDEPADGDAAEAGAEGEGRRRRRRGGRGRKKAAATDAEDEPASAAPDEAP
EAEPDAESTSRRRRRRRSGRADDGARARDEVTALKGSTRLEAKRQRRREGRDAGRRRTII
TEAEFLARREAVERAMVVRERDGRTQIAVLEDGVLVEHYVARKQQSSMVGNVYLGRVQNV
LPSMEAAFVDLGKGRNAVLYAGEVNWDAAGLEGQPRRIEQALSSGDSVLVQVTKDPIGHK
GARLTSQITLAGRYLVLVPSGAMTGISRKLPDTERARLKKLLKEIVPDGQGVIVRTAAEG
ASEDELRRDVERLTKQWADIQTKVNGSGGTGRKPQKVTAPALLKGEPELALRVVRDVFNE
DFSSLTVSGDEAWHTISDYLTTVAPDLAQRLTHWTDDADVFARFRIDEQLAKGLDRKVWL
PSGGSLVIDRTEAMTVVDVNTGKFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIV
IDFIDMVLESNRDLVLRRLIECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSETC
EHCHGRGFVVHTEPFEAQPVAEEETPRVGRRRGSRSRGAAQPAQPAEDDASAAAREAVRA
TLATIAAAAQHAHESTDRPEGDDGATPSADVTPAEVDEVQLVAVESEVEPEPESQAEAEP
QSEPEVEPEPEPQAATEADGAAQDEQQPADVAADPGEETEPSDA
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagagcccacgaacgaagcgcccaccaacgacgagcccaccgaggccgcaccggcg
ccacgccgccgcggcccgcggcgcgccagccggggggtgacgacgcccgtggcgccggac
cccgccgtcgaggccgccgcaccggagcctgagcctgagccggcccccgtgcccgccccc
gagcccgaggcgccgcccgagccctccgccgagccggccgacgccgaggtgccggtcgag
gacgacgcaccgccctcccgcgcgacgttctcgcacgcggcaccgccggcacccgagcgc
gacgccgaccagaggctcgacgtgttcgccgccttcggcatcggcgcgcaggcggcgacg
cccgagcccgccgcggccgacgaggtcgtgcctgcgcccgagcccgccgcggcggacgag
gacgacgaagagctgcccgagggggccgaggacgccgaggacggaccccgtctgccggct
accgcgctgctgttccaggcgcccgagccgcgggcacgctcccggcgtcgggcgtcgtcg
ccggccgggccgccgagccccgaggatgccggcgagcgaccggcctccccggagcacgtc
gacgcgccctctgaggcggcggcgtccgacgccccggaggcggccgagcgtccgaagcga
cgcaagcgcaggaagtcgggcggctcggccgagcccgaggccccggagaagaccgaggac
gccgagcaggcggccaccgccgcgccggacgaggacgagccggccgacggcgatgccgcc
gaggccggcgccgagggcgagggccgccgtcgtcgtcgccgcggagggcggggccgcaag
aaggcggcggccaccgacgccgaggacgagcctgcgtccgctgcgccggacgaggcgccg
gaggcggagccggacgccgagtccacgtcgcgacgtcgccgccggcggcgttccgggcgc
gccgacgacggcgcccgcgcacgcgacgaggtgacggcgctcaaggggtcgacgcggctc
gaggcgaagcgccagcgacgccgcgaggggcgcgacgccggacgccgtcggaccatcatc
acggaggcggagttcctcgcccgccgcgaggccgtcgaacgcgcgatggtcgtgcgggag
cgcgacggccgcacgcagatcgccgtgctcgaggacggcgtgctcgtggagcactacgtc
gcccgcaagcagcagtcctcgatggtcggcaacgtgtacctgggccgcgtgcagaacgtg
ctgccgagcatggaggcggcgttcgtcgacctcggcaagggacgcaacgcggtgctgtac
gccggtgaggtgaactgggacgccgccgggctcgaggggcagccgcgccggatcgagcag
gcgctgtcgtccggcgactcggtgctcgtgcaggtgacgaaggacccgatcggccacaag
ggcgcgcgactcacctcgcagatcacgctcgccgggcgctacctcgtgctcgtgccgagc
ggggcgatgacggggatctcgcgcaagctccccgacaccgagcgcgcccgcctgaagaag
ctcctcaaggagatcgtccccgacgggcagggcgtcatcgtgcgcacggccgcggaaggg
gcgagcgaggacgagctgcgccgcgacgtcgaacgcctgaccaagcagtgggcggacatc
cagacgaaggtcaacggctccggtggcaccggccgcaagccccagaaggtgacggcgcct
gccctgctgaagggcgagccggagctcgcgctgcgcgtcgtccgtgacgtgttcaacgag
gacttctcctcgctcacggtgtccggcgacgaggcctggcacacgatctccgactacctc
acgaccgtcgcgcccgacctcgcccagcggctgacccactggaccgacgacgcggacgtg
ttcgcgcggttccggatcgacgagcagctcgccaaggggctcgaccgcaaggtctggctc
ccgtccggcggctcgctcgtcatcgaccgcaccgaggcgatgaccgtcgtcgacgtcaac
accgggaagttcaccggctcgggcggcacgctcgaggagaccgtcacccggaacaacctc
gaggccgccgaggagatcgtccggcagctgaggctgcgggacatcggcgggatcatcgtc
atcgacttcatcgacatggtcctcgagtccaaccgcgacctcgtgctgcggcggctcatc
gagtgcctcggccgggaccgcacgcggcaccaggtcgccgaggtgacctccctcggtctc
gtccagatgacgcgcaagcgcgtcgggcagggcctcgtcgaggcgttcagcgagacgtgc
gagcactgccacggacgaggcttcgtggtgcacaccgagccgttcgaggcgcagcccgtg
gcggaggaggagacgccgcgcgtcggccggcgtcgcgggtcccgctcgcgcggtgcggcg
cagcccgcgcagccggcggaggacgacgcctcggcggccgcccgcgaggcggtgcgcgcg
acgctcgcgaccatcgcggccgccgcgcagcacgcgcacgagagcaccgatcggcccgag
ggcgacgacggcgcgacgccgtccgcggacgtgacgcccgccgaggtcgacgaggtccag
ctggtcgccgtggagtccgaggtagagccggagccggagtcgcaggccgaggcggagcct
cagtccgagcccgaggtggagccagagccggagcctcaggcagcgaccgaggcggacggc
gcagcgcaggacgagcagcagccggccgacgtcgccgcggacccgggcgaggagaccgaa
cccagcgacgcgtga
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