Beutenbergia cavernae: Bcav_2005
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Entry
Bcav_2005 CDS
T00893
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bcv
Beutenbergia cavernae
Pathway
bcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bcav_2005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcv03019
]
Bcav_2005
03009 Ribosome biogenesis [BR:
bcv03009
]
Bcav_2005
Enzymes [BR:
bcv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bcav_2005
Messenger RNA biogenesis [BR:
bcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bcav_2005
Ribosome biogenesis [BR:
bcv03009
]
Prokaryotic type
rRNA helicases
Bcav_2005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
ResIII
P-loop_SecA
adh_short
Motif
Other DBs
NCBI-ProteinID:
ACQ80260
UniProt:
C5C5R9
LinkDB
All DBs
Position
complement(2284774..2286543)
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AA seq
589 aa
AA seq
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MSDVALTSPATQPVGAGSEPSFDDLGLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDL
VGVAQTGTGKTAAFGLPLLAAVDPQLAAVQALVLTPTRELAIQVSDAVASFVPSGAGVKV
LPIYGGASFVPQLRGLERGAQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGF
AEDVDVILAKTPATKQVALFSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAI
VPYRNKAEALSRVLATSDADAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERER
IVERLRSGALDVLVATDVAARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNAL
TFLTPKEKPRLRTIERVTGSRLVEATIPTNAEVAAHRTGAALATAHARLGAGDVSAHRER
LVAHVAELGVDPLDVAAALLALAVGDDGAPAGDDLALPAHDGDRQRGFDGDRGRERGGRR
GGGDGEKYRIAVGHRDGVSPQAIVGAITGEGGLRGADIGKIDIFPSFSLVEIPGGVSPDV
ARRIGAAKVAGRPLRIRLDDGPPNRGHRSGGGQRDARGPRDSRRPSRAY
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgttgccctgacctcccctgccacccagcccgtcggcgccggctccgagccg
tcgttcgacgacctgggcctgccgcaggccctcctcgacgccgtcaccggcctcggcttc
acgacccccacccccatccagacggcggcgatcccggcgctgctctccggccgggacctc
gtcggcgtcgcccagacgggcaccggcaagaccgccgcgttcggtctgccgctcctcgcc
gccgtcgacccgcagctggccgccgtgcaggccctcgtgctcacgccgacgcgcgagctc
gcgatccaggtgagcgacgcggtggcgtcgttcgtgccgtccggtgccggcgtgaaggtg
ctgccgatctacggcggcgcgagcttcgtgccgcagctgcgcggcctcgagcggggagcg
caggtcgtcgtcgggactcccggtcgcgtgatcgacctcctcgagcggggttcgctcgac
ctcgacgcgctgcgctacctcgtgctcgacgaggccgacgagatgctccggatgggcttc
gccgaggacgtcgacgtcatcctggcgaagacgcccgccacgaagcaggtcgcgctgttc
tccgcgaccatgccgccgccgatccgcaaggtcgccgagacgcacctgcgcaacccggag
gagatcgccgtcgcccgccaggccacgccgatcgccgcggtgacgcagacgtacgccatc
gtgccgtaccggaacaaggccgaggcgctgtcgcgggtcctcgcgacgagcgacgccgac
gccgcgatcgtgttcgtccgtacgcgtgagaccgcggaggaggtcggcaccgccctcgcg
tcgcgcgggatcaacgccgcgtcgatcagcggcgacgtcgctcagcgtgaacgtgagcgg
atcgtcgagcggctccgctcgggtgcgctcgacgtgctcgtggcgaccgacgtcgcggcc
cgtggtctcgacgtcgagcgcatcgggctcgtcgtcaacttcgacgtgccgcgcgaggtc
gagacgtacgtgcaccggatcgggcggaccggccgcgctgggcgtaccgggaacgccctg
acgttcctcacgccgaaggagaagccgcgcctgcgcacgatcgagcgcgtcacgggttcc
cgcctcgtcgaggccaccatcccgacgaacgccgaggtcgccgcgcaccggaccggtgcg
gcgctggcgacggcgcacgcgcgcctcggggcgggcgacgtgtccgcgcaccgggagcgt
ctcgtcgcccacgtcgcggagctcggcgtggacccgctcgacgtcgctgctgcgctcctc
gcgctcgctgtcggcgacgacggcgctcccgccggcgatgacctcgcccttcccgcgcac
gacggcgaccggcagcgcgggttcgacggtgaccggggtcgcgagcgcggcggacgacgt
gggggcggagacggcgagaagtaccggatcgccgtcggccaccgggacggcgtcagcccg
caggcgatcgtcggcgcgatcaccggtgagggcggcctccgcggcgccgacatcggcaag
atcgacatcttcccgagcttctccctcgtggagatcccgggcggggtctcccccgacgtg
gcgcgccggatcggtgccgccaaggtcgcggggcgcccgctgcggatccggctcgacgac
ggcccgccgaaccgcggccaccgctcgggcggcggccagcgtgacgcgcggggtccgcgc
gactcgcgccggccctcgcgcgcgtactga
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