Beutenbergia cavernae: Bcav_3154
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Entry
Bcav_3154 CDS
T00893
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcv
Beutenbergia cavernae
Pathway
bcv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bcav_3154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcv03021
]
Bcav_3154
03400 DNA repair and recombination proteins [BR:
bcv03400
]
Bcav_3154
Enzymes [BR:
bcv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bcav_3154
Transcription machinery [BR:
bcv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bcav_3154
DNA repair and recombination proteins [BR:
bcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bcav_3154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
Motif
Other DBs
NCBI-ProteinID:
ACQ81398
UniProt:
C5C0K2
LinkDB
All DBs
Position
complement(3505820..3509710)
Genome browser
AA seq
1296 aa
AA seq
DB search
MLDVNVFDELRIGLATADDVRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITEVDDERRHTDLPSLQNEIDLERGEVAKRRDLDIEARAQRLEAD
LAELEAEGAKADARRKVRDSAEREMAQIRKRSDAELDRLERVWDRFKNLKVADLEGDELL
YRELEQRYGSYFTGSMGAAAIQKRLETFDLDAEAEALRETIRSGKGQRKTRALKRLKVVN
AFMTTTNSPLGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
SVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPSQDMIIGLYHLTSDKDEALGAGR
SFSSIAEAIMAFDAGGLDLNAVVKIRFTDLVPPTGFEAPEGWTEGESLLFETTLGRALFN
EALPVDYPFVNGVVGKGELSVIVNDLAERYPKVEVAASLDALKEAGFSWATRSGVTIAIS
DVVTPSRKKEIVESYEKKAAKVQGQYEKGLITDEERRTELIDIWTQATNDVDAAMRENFP
ERNTVNRMVGSGARGNWMQVRQIAGMRGLVANPKGEIIPRPILSNYREGLSVVEYFIATH
GARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLVTTIAEVGPDGVRRRSE
TVETGAYARTLATTVTSEDGTVLAEGGDDVGDVLISRLVEAGVDTIKVRSVLTCASRVGT
CAKCYGRSLATGKLVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVQ
ELFEARTPKGEAPISEVAGRIAIDETDRTRRIVVTPDDGAEEIVYPITKRSRLLVNDGDH
VAVGQQLIAGAVDPKKVLRILGPRAVQKHLVDEVQEVYRSQGVDIHDKHIEVIVRQMLRR
VTVLDSGEANLLPGELAERGRFEDENRRVVSEGGTPASGRPELMGITKASLATDSWLSAA
SFQETTKVLTEAALSGRSDSLLGLKENVILGKLIPAGTGLPRYRNVRVEPTEEAKAELYP
SFGYDEIDYLPLGTGSGEAIALEELDLGRGYEADYR
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaatgtcttcgacgagctgcgcatcggtctcgcgacagccgacgacgtc
cgtgcctggtcgcacggcgaggtcaagaagcccgagacgatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcgggaagtacaagcgcgtccgcttcaagggcatcatctgcgagcggtgcggcgtc
gaggtcacccgctcgaaggtgcgccgtgagcggatgggccacatcgagctcgccgcgccg
gtcacgcacatctggtacttcaagggcgtcccgtcgcgcctcggctacctgctcgacctc
gccccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcaccgaggtcgac
gacgagcgccggcacaccgacctgccgagcctccagaacgagatcgacctggagcgcggc
gaggtggcgaagcgtcgcgacctcgacatcgaggcgcgcgcccagcggctcgaggccgac
ctggccgagctcgaggcagagggcgcgaaggctgacgcacgccgcaaggtgcgcgactcc
gccgagcgcgagatggcgcagatccgcaagcggtccgacgccgagctcgaccggctcgag
cgcgtgtgggaccgcttcaagaacctcaaggtcgccgacctcgagggcgacgagctcctg
taccgcgagctcgagcagcgctacggctcgtacttcacgggctcgatgggcgccgcggcg
atccagaagcgtctcgagacgttcgacctggacgccgaggccgaggcgctgcgcgagacg
atccgctccggcaaggggcagcgcaagacgcgcgctctcaagcggctcaaggtcgtcaac
gcgttcatgacgacgacgaactcgccgctcggcatggtgctcgactgcatcccggtcatc
ccgccggacctgcgccccatggtgcagctcgacggtggccggttcgcgacgagcgacctc
aacgacctgtaccgccgggtcatcaaccggaacaaccggctcaagcgtctgctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgaccggtcaccggtccgggcaaccgcccgctgaag
tcgatctccgacatgctcaagggcaagcaggggcggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgcagcgtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgccgaagcagatggcgctcgagctgttcaagccgttcgtcatgaagcggctc
gtcgacctcaaccacgcgcagaacatcaagtccgcgaagcggatggtggagcgcgcgcgg
tcggtcgtgtgggacgtgctggaagaggtcatcacggagcaccccgtgctgctcaaccgg
gcgcccacgctgcaccgtctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gcgatccacctgcacccgctcgtctgcgccgcgttcaacgcggacttcgacggcgaccag
atggccgtccacctgcccctgtccgccgaggcgcaggccgaggcgcgcatcctcatgctc
tcgagcaacaacatcctcaagccgtcggacggccgtccggtgaccatgccctcccaggac
atgatcatcggcctgtaccacctgacgagcgacaaggacgaggcgctcggcgccgggcgt
tcgttctcgtcgatcgccgaggcgatcatggcgttcgacgccggagggctcgacctcaac
gcggtcgtcaagatccggttcacggacctcgtgccgccgaccgggttcgaggcccccgag
gggtggaccgagggcgagtcgctgctgttcgagaccaccctgggtcgcgcgctgttcaac
gaggcgctgcccgtggactacccgttcgtgaacggggtcgtcggcaagggcgagctctcg
gtgatcgtcaacgacctggccgagcggtacccgaaggtcgaggtcgccgcgagcctggac
gcgctcaaggaggccggcttctcgtgggccacccggtcgggtgtcaccatcgcgatctcg
gacgtcgtcacgccgtcccgcaagaaggagatcgtcgagtcgtacgagaagaaggccgcc
aaggtccagggtcagtacgagaagggtctgatcaccgacgaggagcgccgtacggagctc
atcgacatctggacccaggcgaccaacgacgtcgacgcggcgatgcgggagaacttcccg
gagcgcaacacggtcaaccgcatggtcggctccggggcgcgaggcaactggatgcaggtg
cgccagatcgccggtatgcgtggcctggtggcgaacccgaagggcgagatcatcccgcgc
ccgatcctctcgaactaccgcgagggtctgtcggtcgtcgagtacttcatcgcgacgcac
ggcgctcggaagggtctggcggacaccgcgctgcggaccgccgactccgggtacctcacg
cgtcgtctggtggacgtgtcgcaggacgtcatcatccgtgaggaggactgcggcaccgac
cgtggcctcgtcacgacgatcgccgaggtcggcccggacggcgtccgtcgccgttccgag
accgtcgagaccggtgcgtacgcccgcacgctcgcgaccaccgtcacgagcgaggacggc
accgtgctcgcggagggcggcgacgacgtcggcgacgtgctcatctcgcgcctcgtcgag
gccggggtcgacacgatcaaggtgcgctcggtcctcacgtgcgcctcgcgggtcggcacg
tgcgcgaagtgctacggccggtcgctcgcgacgggcaagctcgtcgacgtcggcgaggcg
gtcggcatcatcgccgcccagtcgatcggtgagccgggcacgcagctgacgatgcgcacg
ttccacaccggtggcgtcgcctcggcggacgacatcacgcagggtctgccgcgcgtgcag
gagctgttcgaggcccgcacccccaagggtgaggcgccgatcagcgaggtcgccggccgg
atcgcgatcgacgagaccgaccgcacgcgtcggatcgtcgtcacgccggacgacggcgcc
gaggagatcgtgtacccgatcacgaagcggtcgcggctgctcgtgaacgacggcgaccac
gtggcggtgggccagcagctcatcgccggtgcggtcgacccgaagaaggtgctgcgcatc
ctcggcccgcgtgccgtgcagaagcacctggtcgacgaggtgcaggaggtctaccgctcg
cagggcgtggacatccacgacaagcacatcgaggtcatcgtccggcagatgctgcggcgg
gtcaccgtgctcgactccggtgaggcgaacctgctgcccggcgagctcgccgagcgtggg
cgcttcgaggacgagaaccggcgcgtcgtgtccgagggcgggaccccggcctccggccgg
cccgagctcatgggcatcacgaaggcgtcgctcgcgacggactcgtggctctcggcggcc
tccttccaggagacgacgaaggtgctcacggaggcggccctcagcgggcgcagcgactcg
ctgctcggcctgaaggagaacgtcatcctgggcaagctcatcccggcgggtaccggtctt
ccgcggtaccgcaacgtgcgggtggagccgaccgaggaggcgaaggccgagctgtacccg
agcttcgggtacgacgagatcgactacctccccctcggcaccggctccggcgaggcgatc
gcgctggaggagctcgacctcggtcgcggctacgaggcggactatcgctga
DBGET
integrated database retrieval system
