Cytobacillus dafuensis: FSZ17_03960
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Entry
FSZ17_03960 CDS
T06982
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bda
Cytobacillus dafuensis
Brite
KEGG Orthology (KO) [BR:
bda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bda03009
]
FSZ17_03960 (rlmD)
Enzymes [BR:
bda01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FSZ17_03960 (rlmD)
Ribosome biogenesis [BR:
bda03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FSZ17_03960 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
TRM5-TYW2_MTfase
Methyltransf_25
MTS
Methyltransf_15
PrmA
Cons_hypoth95
Methyltransf_11
RrnaAD
UPF0020
AsnC_trans_reg
TRM
2-ph_phosp
TPMT
PCMT
N6_N4_Mtase
Methyltransf_4
Methyltransf_12
Methyltransf_23
TYW2_N_arc
Motif
Other DBs
NCBI-ProteinID:
QED46491
UniProt:
A0A5B8Z112
LinkDB
All DBs
Position
786201..787580
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AA seq
459 aa
AA seq
DB search
MSKTLPVQKNDYIDVVFEDLTHDGAGVAKVDGYPLFVPNGLPGEKAKIKVIKVNKGYGFG
KLIETYEESPYRVKATCPIYKECGGCQLQHLSYEGQLKAKEKQVKDVLERIGKLENVKVH
PVLGMKEPWRYRNKAQVPVGEQEGGLIGGFYQQRSHQIINMKECIIQQEKNDEVVQAVIE
ICSRYGVRAYDEGRHKGDLRHVMTRYGLVTGEVMVVLISRTNDLPHKKKLIEEIISRVPG
IKSIVQNVNPKKTNVIFGDETKVLWGEEVIYDFIGDIKFAISARSFYQVNPEQTKVLYEK
ALEYADLSGEEKVIDAYCGIGTISLFLAKKAKKVFGVEIVPEAIEDAKRNAELNGITNAV
FAAGEAEAVIPKWYEKGNSADVLVVDPPRKGCDEALLKTIIEMKPKRVVYVSCNPGTLAR
DLRILEDGGYKTVEVQPVDMFPQTTHVESVALLTRKIQN
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacactaccggtacaaaaaaatgattatatagatgttgtatttgaggatcta
acccatgatggggctggagttgctaaggttgatggctatccgctatttgtcccgaatggt
ctcccaggagaaaaagcaaagatcaaagtgattaaggttaataaagggtacggatttggt
aaactgattgaaacatacgaagaaagcccatatcgagtaaaggctacgtgtccaatttat
aaggaatgcggcggctgtcagcttcagcacttaagctatgagggacagttaaaagcaaag
gaaaagcaagtgaaggatgtgcttgagcggattgggaagcttgaaaatgtgaaagttcac
ccagtacttggaatgaaggaaccttggcgataccgaaacaaggctcaagttcctgttggt
gaacaggaaggcggattaatcggcggcttctatcagcagcgaagccatcaaatcattaat
atgaaggaatgcatcatccagcaggagaaaaatgacgaggttgttcaggcggtcattgaa
atctgcagccggtacggcgttcgtgcctatgatgaaggcagacataaaggggaccttcgc
catgtcatgacccgttacggacttgtgacaggtgaagtgatggttgtattaatttcaaga
acaaatgatttgccgcataaaaagaaattgattgaagaaatcatctcgcgagtaccaggc
ataaaatcaattgtccaaaacgtcaatcccaagaaaacaaatgtgatctttggagatgaa
acaaaagtactttggggagaagaagtcatttatgatttcatcggtgatataaagtttgcc
atttctgcgcgttccttttatcaagtaaatccagagcaaacaaaggttctttacgaaaaa
gccctggaatacgctgatctaagcggcgaagaaaaggttattgatgcttactgcggaatt
ggtacgatttctttatttctcgccaaaaaggcgaagaaggtttttggtgtagagattgtg
ccggaagccattgaggatgcgaaacgaaatgcagaacttaacggaatcacaaatgcagta
tttgctgctggggaagcggaagcagtcattccaaaatggtatgaaaaaggtaattcagca
gacgtacttgttgtcgatcctcctcgaaaaggatgcgacgaggcacttttgaaaacaatt
atagaaatgaagccgaagagagtcgtctatgtcagctgcaatcctggaacattggcgagg
gatttgcggatattggaagatggcgggtataagacagttgaggtgcagccggtggatatg
tttccgcagactactcatgtagagagtgtcgcgctgttgactcgcaagattcaaaattag
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