Bdellovibrio sp. NC01: DOE51_00020
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Entry
DOE51_00020 CDS
T06360
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
bdc
Bdellovibrio sp. NC01
Brite
KEGG Orthology (KO) [BR:
bdc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdc03032
]
DOE51_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
bdc03400
]
DOE51_00020 (gyrB)
Enzymes [BR:
bdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
DOE51_00020 (gyrB)
DNA replication proteins [BR:
bdc03032
]
Prokaryotic type
DNA Topoisomerases
DOE51_00020 (gyrB)
DNA repair and recombination proteins [BR:
bdc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DOE51_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_insert
GyrB_hook
HATPase_c_3
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QDK36097
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Position
3941..6361
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AA seq
806 aa
AA seq
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MSVEEQKSYSADSIQVLEGLEAVRKRPGMYIGDTAFKGYHHLVYEIVDNSVDEHLAGYCK
SIKVSINADESITVEDDGRGIPVATQKQTGKSALELVMTVLHAGGKFDGGGYKVSGGLHG
VGASVVNALSTRVSVEVQRDGHFWRQSYERGKILAPIAQGEATTKTGTKTTFKPDRDIFK
DETLSYDFNTLANRFRELAFLNAGLHISLSDERTGKKQDFQYAEGVAEFVKYMNQSKKAL
HNEVVYFKGEKDDVEVEIAMQWNDSYSESIFTYCNNINTHEGGTHLVGFRAALTRTTNAY
ATEKNLLKDLKTNLEGEDIREGLAAVISVKVREPQFEGQTKTKLGNAEVKGIVESLVNEK
LADWMDRNPSVSKNVIMKCVESARAREAARKARDLTRRKTALDGGSLPGKMADCQERDPA
LCELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKIISSEEIKVIISALGT
GIGKDNVNVDKIRYHKIIIMTDADVDGSHIMTLLLTFFYRQMPLVLERGYVYIAQPPLYR
AKKGKEETYLKNEAALTEFLLSSGLNNFKIKGKENLPEADLRKLILNIQRFNDLLRVSSK
KYDKDVLYFLLSKVPDFEKTFADEGKIQSALNDLGAWINSDPKLGITEYKGEVKKDELTG
QAYADIYTVRYADRMTTKFGLDSLRSSEVIELRKIWGEIQSVSTLPITILEGENEVEFES
YNEFYAHVMESTKKGMYIQRYKGLGEMNPEQLWETTLNKENRTLLQVTIDDAVAADETFS
ILMGEMVEPRRQFIHDNALLARSLDV
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagtagaagaacaaaaatcctactcggccgattcgatccaagttctggaaggtctc
gaagcggttcgtaaacgtcctggtatgtacatcggtgatacagctttcaaaggttatcac
catcttgtgtatgaaattgtggataactcggtagacgaacatcttgcaggttattgcaaa
tctatcaaagtctctatcaacgccgatgaatcgatcactgtcgaagacgacggtcgtggt
attccagttgcgacacaaaaacaaacaggcaaatctgcactagaactagttatgacagtt
cttcacgccggcggtaaattcgacggtggcggttataaagtttccggtggtctacacggt
gtgggtgcttccgttgtgaatgcgctttcaactcgtgtcagcgttgaagttcaacgtgat
ggtcatttctggagacaaagctacgagcgcggtaaaattcttgcgccgatcgctcaaggt
gaagcgacaacaaaaactggtacgaaaactactttcaaaccagatcgcgatatcttcaaa
gacgaaactttgtcttacgacttcaacactcttgcgaatcgtttccgtgaacttgcattc
ttgaatgcgggtcttcatatctctttgtcagacgagcgcactggtaagaaacaagatttc
caatacgctgaaggtgtggcggaatttgttaaatacatgaatcaatctaagaaggccctt
cataacgaagtggtttacttcaaaggtgaaaaagacgacgtcgaagttgaaatcgcaatg
cagtggaacgattcttactcagaatctattttcacttattgtaacaacatcaacacgcac
gaaggtggtactcacctagttggtttccgtgcggctttgactcgtacaacgaacgcttac
gcgactgaaaaaaatcttttgaaagatttgaaaacaaaccttgagggtgaagacatccgt
gaaggtttggcagcagttatttctgtaaaggttcgtgaaccacaattcgaaggtcagaca
aaaacaaaacttggtaatgccgaagtaaaaggtattgttgagtctttggtgaatgaaaaa
ttagctgactggatggatcgcaatccttcagtttctaaaaacgttatcatgaagtgcgtg
gaatcagcgcgtgctcgtgaagctgctcgtaaggcgcgtgatttaactcgtcgtaagaca
gctcttgatgggggatcattgccaggtaaaatggcggactgccaagaacgtgatcctgca
ctttgcgaattgtatctggtcgagggtgactctgccggtggatctgcgaaacaaggacgc
gatcgtcgtacccaagcgatcttgcctttgaaaggtaaaatcctaaacgtagaaaaagcg
cgttttgataaaatcatctcttctgaagagatcaaagttatcatctctgctcttggtact
ggtatcggtaaagacaatgtgaacgtagataaaatccgttatcacaaaatcattatcatg
accgatgccgacgtcgacggttcgcatatcatgactcttcttttaacattcttctatcgc
caaatgccgttggtactggagcgtggttatgtgtatatcgcgcaaccaccattgtaccgt
gcgaaaaaaggtaaagaagaaacgtacttgaaaaatgaagcggctttgacagagttcttg
ttaagctcgggtctgaacaatttcaaaatcaaaggcaaagaaaatcttcctgaagcagat
ttgcgtaagttgattttgaacattcaacgcttcaacgatcttcttcgtgtttcttctaag
aaatacgacaaagacgtattgtatttcttgctttcaaaagttcctgacttcgaaaaaact
tttgctgatgaaggtaaaattcaatcagcgcttaatgatcttggtgcatggattaactct
gatccaaaacttggcatcacagaatacaaaggcgaagttaagaaagatgaacttactggc
caagcgtatgccgacatctacactgttcgttatgcagaccgcatgacaacgaagtttgga
ttggacagcttgcgttcttcagaagtgatcgagcttcgtaaaatctggggcgagatccaa
tctgttagcacattgccgatcacaattcttgagggtgaaaacgaagttgaattcgaaagc
tacaatgaattctacgctcacgtgatggaatctacgaaaaaaggaatgtacatccaacgt
tacaaaggattgggagagatgaatcctgagcagttgtgggaaactacactgaacaaggaa
aatagaactcttcttcaagtgacaatcgacgatgcggttgctgctgacgaaacgttctcg
atcttgatgggtgaaatggtagagcctcgtcgtcaatttatccacgacaatgctcttctt
gctcgcagcctggatgtttaa
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