Bdellovibrio sp. NC01: DOE51_01060
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Entry
DOE51_01060 CDS
T06360
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bdc
Bdellovibrio sp. NC01
Pathway
bdc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bdc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DOE51_01060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdc03021
]
DOE51_01060
Transcription machinery [BR:
bdc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DOE51_01060
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
FAM176
Motif
Other DBs
NCBI-ProteinID:
QDK36285
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Position
206339..208168
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AA seq
609 aa
AA seq
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MKQNLPNKQEKEPTKVLSLQEQESLIKEEIQKFLKLAKEKGALTIEEINDLLPPEIIAPQ
ALDAFMQGLEAGGVVISDLSETSKEEEGEGSFLESPDSDDEEVDEEEKAESEDVKGNDPV
RLYLRKMGSVSLLTREGEVEIARRIEKGEREIVRAILLSPLGTYEIIQLGKRLDEGRIKV
KSIFRGLEDEDTQYDEKEYIDKIHELIGKVTEYQKAAAKHFEVLRKEETNTPARQAAMKE
LVVMNDKLMANFESVNFNRKTINRVVIKFKNLVNRIGTLRRRIKDGVERTFSKDVNAMVE
RMKLVESNEKELTRMTRDTGLNYQKYKSYVMQAQEAEIRIKRLDSETEMNHTWVKETYTA
IWKGEREADAAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLIQELGREPTPEEIA
DKMDMPVDKVRKVLKIAKEPISLETPVGEEEDSHLGDFIEDKKVINPAEAIVNLNLAEQT
RRVLSTLTPREEKVLRMRFGIGEESDHTLEEVGQDFNVTRERIRQIEAKALRKLRHPSRS
NKLKAFVDS
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaacctaccaaacaaacaagagaaagaaccaacaaaagttctttcactgcaa
gaacaagaatctctgattaaagaagaaattcagaagtttctgaagcttgctaaggaaaaa
ggcgcgttgacgatcgaagagatcaacgaccttcttcctcctgaaattatcgcaccccaa
gctcttgatgccttcatgcagggccttgaggccggtggtgtagttatttcagacttgtct
gaaacttcgaaagaggaagaaggcgaaggatcattccttgaaagcccagattctgatgac
gaagaagtagatgaagaagaaaaagctgaaagcgaagacgttaagggtaacgatcctgtt
cgcttatatttgcgtaaaatgggttccgtatctctacttactcgtgagggtgaggttgag
atcgctcgtcgtatcgaaaaaggggagcgtgaaatcgttcgtgcgatccttttgtcgcct
ctaggtacatacgagatcattcaacttggtaaacgtcttgatgaaggccgtatcaaagtt
aaatcgatcttccgtggtcttgaggacgaagatactcaatacgacgaaaaggaatacatc
gataagattcatgagcttatcggtaaagtaactgagtaccaaaaagcagcagcgaaacat
ttcgaagttcttcgtaaagaggaaacgaacactcctgctcgtcaagccgctatgaaagaa
cttgttgtgatgaacgataagttgatggcgaactttgaatcagtgaacttcaaccgtaag
acaatcaaccgtgtcgtaatcaagttcaaaaacttggtgaaccgtatcggaactcttcgt
cgtcgtatcaaagacggtgtcgagcgcacgttctctaaagacgtgaacgcgatggttgag
cgcatgaagcttgttgaatcgaatgaaaaagaattaacaagaatgactcgtgatactggc
ttgaactatcaaaagtacaagtcatacgtgatgcaagctcaagaagctgaaatccgtatc
aagcgtttggattcagaaactgaaatgaatcacacttgggtgaaagaaacatacactgcc
atctggaaaggtgagcgtgaggccgatgctgcgaaatctgaattggttgaagcaaacttg
cgtctagttgtttctatcgcgaagaagtacacgaaccgcggtttgcaattcttggatttg
atccaagaaggtaacatcggtttgatgaaagccgttgataagttcgaataccgtcgtggt
tacaaattctcgacttatgcgacttggtggattcgtcaggcgatcactcgtgctattgcc
gatcaggcgcgtacgatccgtatccctgtgcacatgatcgaaacgatcaacaagcttgtt
cgtacatctcgttacttgatccaagagcttggtcgtgaaccaactccggaagagatcgca
gataaaatggacatgccggttgataaagttcgtaaagttttgaaaatcgcgaaagagcca
atctctttggaaactccagtgggtgaagaagaagattcgcacttgggcgactttatcgaa
gacaaaaaggttatcaatcctgcagaagcgattgttaacttgaacttggcggaacaaact
cgccgtgttctttcgactttgactccgcgtgaagaaaaagttcttcgtatgcgtttcggt
attggtgaagaatcggatcacactcttgaagaggttggtcaggacttcaacgtaactcgt
gaacgtatccgtcagatcgaggcgaaagctcttcgtaagcttcgtcacccttctcgcagc
aacaagttgaaagcttttgttgatagctag
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