Bdellovibrio sp. NC01: DOE51_06580
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Entry
DOE51_06580 CDS
T06360
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bdc
Bdellovibrio sp. NC01
Pathway
bdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DOE51_06580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdc03019
]
DOE51_06580
03009 Ribosome biogenesis [BR:
bdc03009
]
DOE51_06580
Enzymes [BR:
bdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DOE51_06580
Messenger RNA biogenesis [BR:
bdc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DOE51_06580
Ribosome biogenesis [BR:
bdc03009
]
Prokaryotic type
rRNA helicases
DOE51_06580
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Helicase_RecD
ERCC3_RAD25_C
Phage_Gp111
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QDK39682
UniProt:
A0A514X1P4
LinkDB
All DBs
Position
complement(1369045..1370835)
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AA seq
596 aa
AA seq
DB search
MDAMKDMGFSTPTPIQTQALPILLSGAKDFIGLASTGTGKTAAFGIPLVENIDTTTKDTQ
ALVLSPTRELALQVAEQLTLLGKKKGLRVVTIYGGASYRTQIDGIKRGAHIVVATPGRLV
DFLEQKMIKLKSVQTVVLDEADEMLSMGFKEPLDFILSATHPDDDTQAERAACRTWLFSA
TMSSEVRRLSEKYLENPETVQANKVGSTASTIQQVYYTVKNSAKMEVICRLLQTLPEFYG
IIFCQTKMEVAELAEMLTQRGFPADSLHGDKSQQEREMTLKKFKQSQIKVVVATDVAARG
LDIKDLTHVINHSLPWDVESYVHRIGRTGRNGQSGTAITLVNPEQLNLLRRVMQTTKATL
TKGVVPSGDEVAGLKIKDVLDKVSTMKEDNATLQQANDLIRVLVTAGDTDLSKFSKEDLL
ARFIVSYFPNVFVKNDKFLDYMGDRVPRELLPRDPNDNRFTSNRDGGGRDRGGFRGGRGG
GFRSRNNDRGGYRADRSSSSFSSDRPERSERSERPRFAGNDGGEQRTEREQRGNFNEGSA
PRGFRRRDSGGYSPERSSSSSEGRSERKDRGGDHPGIKRSRSGGSSERSSARRFRD
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgatgaaagacatgggcttctcgactccaacgcccattcagacacaagcgctt
ccgattcttttatcaggagctaaagattttatcggccttgcctctacaggtactggcaaa
actgctgcatttggtattcctcttgtagaaaacatcgatacaacaacaaaagacacgcaa
gctctagttttgagcccaacacgtgaattggctttgcaagttgcagagcaattgactttg
cttggtaagaaaaaaggtcttcgcgttgttacgatttacggtggcgcaagctatcgcaca
caaatcgacggcatcaaacgtggcgcacacatcgttgttgcaacaccaggtcgtttggtt
gatttcttagaacaaaaaatgatcaaacttaagagcgttcaaacagttgttttggacgaa
gcagacgaaatgctttctatgggctttaaagagccattggatttcattctttctgcaact
catccagatgacgatactcaagcagaacgcgcggcttgccgtacatggttgttctctgca
actatgagctctgaagttcgtcgtttgtctgaaaaatatttggaaaatccagaaactgtt
caagctaacaaagttggctcgacagcttcgacaatccaacaagtttattacacagttaaa
aattcagctaaaatggaagtgatctgccgtttgttgcaaactcttccagaattctacggt
atcatcttctgtcaaactaagatggaagttgcagagctagcagagatgctaactcaacgt
ggtttcccagcagattctttgcatggtgataagtctcaacaagaacgtgaaatgacgctg
aagaaattcaaacaaagtcagatcaaagtggttgtggcgacggacgttgccgctcgtggt
ttggacatcaaagaccttactcacgttatcaaccactctttgccttgggatgttgaatct
tacgttcaccgtatcggtcgtacaggccgtaacggtcaaagcggtacagcaatcactttg
gtaaacccagagcaattgaatcttcttcgccgtgtgatgcaaacgactaaagcgactctt
actaaaggtgttgtaccttcaggtgatgaagttgctggtcttaaaatcaaagacgttttg
gataaagttagcacaatgaaagaggacaatgcgactcttcaacaagcaaacgacttgatc
cgcgttcttgtcactgctggcgatacagatctttctaagttttcaaaagaagatttgtta
gcacgctttatcgtgtcttacttcccgaacgtgttcgttaagaacgataagttcttggac
tacatgggcgatcgcgttcctcgtgaattgcttcctcgtgatccaaacgacaaccgcttc
acaagcaatcgtgatggtggcggtcgtgatcgcggtggtttccgtggtggtcgtggcggc
ggtttccgcagccgtaataacgatcgtggcggttacagagctgatcgttcatcttcgtca
ttctcttcggatcgtcctgaacgctctgagcgttctgaacgtcctcgttttgctggcaat
gatggcggcgaacaacgcacagaacgcgaacaacgtggcaacttcaacgaaggttctgct
ccacgtggtttccgtagacgcgatagcggcggttactctcctgagcgtagcagcagcagc
agcgaaggccgcagcgaacgtaaggaccgtggtggcgatcacccgggcattaaacgttct
cgctctggtggttcttctgagcgctcttcagctcgtcgtttccgcgactag
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