Bdellovibrio sp. NC01: DOE51_14530
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Entry
DOE51_14530 CDS
T06360
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bdc
Bdellovibrio sp. NC01
Brite
KEGG Orthology (KO) [BR:
bdc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bdc03016
]
DOE51_14530
Enzymes [BR:
bdc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DOE51_14530
Transfer RNA biogenesis [BR:
bdc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DOE51_14530
Prokaryotic type
tRNA splicing ligases
DOE51_14530
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDK38714
LinkDB
All DBs
Position
complement(3029542..3030726)
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AA seq
394 aa
AA seq
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MPVYTNLTTSHVPVKLWTPSEEIESQALKQLQNTASLPFVFKHVAAMPDVHLGIGATVGS
VVATKGAVIPAAVGVDIGCGMIAARLNVEPDRILHDLDRLRATIENAIPVGHESNRSLTK
SVESWKGWKNIPESVLNMRLKEKASLQLGTLGGGNHFIEVCVDEQGSVWVMLHSGSRNVG
KSLAEAHIRNAKSEIKNLAVKLPDPDLAYYVEGTKDYDAYMRDLEWAQSYALENREEMFR
RVLNAISYHIGMHGAEIPYSLKVNCHHNYATKEVHYGENVLVTRKGAVRAQQGDLGIIPG
SMGARSYIVRGKGNPESFNSCAHGAGRRMSRSEAKRRFTVADLKKQTEGVECRKDQHVVD
EIPAAYKDIDQVMNNQNDLVEVVAILKQVLCVKG
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgccagtctatacgaaccttactacatctcatgttccagtgaaattgtggacgccaagt
gaagagattgagtctcaagcattaaagcaacttcagaacacggcatcgttgccattcgtc
ttcaaacacgttgcagctatgcctgatgttcacttgggaattggtgcgacagtgggaagc
gtcgttgcaacgaaaggcgctgtcattcctgctgcggtgggcgtggacattggttgtggt
atgattgcggcacgtttgaacgtagagcctgatcgcattttacatgacctggatcgtttg
cgagcaacaatcgaaaatgcaattccagtgggtcacgaatcgaatagatcccttacaaaa
tctgttgaaagttggaaagggtggaagaatattcccgagtctgtgctgaacatgcgctta
aaagaaaaagcgtcattgcagttaggcacactgggaggaggaaatcacttcatcgaagtt
tgcgtggatgagcaaggcagtgtgtgggtgatgttgcattcaggctcgcgcaatgttggt
aaatctttggcggaagcccacattcgtaacgcgaaatcggaaattaagaatcttgcagtg
aagcttcctgatcctgatcttgcttattatgtcgaaggcacaaaagactatgatgcttac
atgcgcgatcttgagtgggcacaaagttatgctcttgaaaatcgtgaagagatgtttcgt
cgtgtgttaaacgccatctcttatcatatcggaatgcacggtgcggaaattccgtattcc
ttgaaggtgaattgtcaccacaactatgcgactaaagaagttcactatggcgaaaatgtt
ttagtgactcgtaaaggcgcggtacgtgcccagcagggcgatctaggtatcattcccggc
tcgatgggtgcaagaagctacatcgtgcgcggcaaaggcaatcccgagtcgtttaatagc
tgtgcgcacggcgcgggaagaagaatgtcgcgttcggaagccaaacgacgatttacagtt
gccgatcttaagaaacaaaccgaaggtgttgaatgtcgcaaggaccaacacgttgtcgat
gaaattccagcggcctacaaagacattgatcaagtgatgaacaaccaaaacgatctggtc
gaagtggttgcaatcttaaaacaagttctatgtgtaaaaggctaa
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