KEGG   Bifidobacterium dentium Bd1: BDP_0467
Entry
BDP_0467          CDS       T01143                                 
Symbol
truB
Name
(GenBank) truB tRNA pseudouridine synthase B
  KO
K03177  tRNA pseudouridine55 synthase [EC:5.4.99.25]
Organism
bde  Bifidobacterium dentium Bd1
Brite
KEGG Orthology (KO) [BR:bde00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:bde03016]
    BDP_0467 (truB)
Enzymes [BR:bde01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     BDP_0467 (truB)
Transfer RNA biogenesis [BR:bde03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    BDP_0467 (truB)
 Prokaryotic type
    BDP_0467 (truB)
SSDB
Motif
Pfam: TruB_N TruB_C TruB_C_2 PseudoU_synth_2 DKCLD
Other DBs
NCBI-ProteinID: ADB09141
UniProt: D2Q8K5
LinkDB
Position
553026..554114
AA seq 362 aa
MTTKKPEISGLLVVDKPQGVTSHDVVAAIRGALHMKRVGHAGTLDPMATGVLVIGFGNAT
RLLNYIVDHSKTYLATIRLGQRTATDDADGELLEPSAPIAEAFPSRETVERVIAERFTGR
IEQVPNSYSAIKINGQRAYDLAREGKQVELKARPVTVEEFRVDAVRYGYASTRFADAPLT
DAQDIGAGERWHPVSAAPDVRPVMELDVAVSCSAGTYIRALGRDLGEALGLGGYLTMLRR
IRIGDFTETMPNIVTAHTESKTFTNREGAEVTRNRAVIDDAEHLTDRALGMVDSAKASMP
MLRISDQEATDLRFGRRIAHDIRETTAAYVPETGDLVAIIERAKRGEAKPVAVFVQQQEG
QR
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgacgacgaagaagcctgagatttccggcctgctcgtcgtggataaaccgcagggtgtg
accagtcacgacgtggtcgcggcgatacgtggcgccctgcatatgaagcgtgtcgggcat
gccggcacgcttgacccgatggccaccggcgtgctggtgatcggcttcggcaacgccacc
cgactgctcaactacatcgtggaccatagcaagacctatctggctacgatccgactcgga
caacgcaccgccacggatgacgccgatggcgaactgctggaaccgtcggcaccgattgca
gaagcctttccatcccgcgagaccgtggaacgggtcattgcggaacggttcaccgggcgt
atcgaacaggtcccgaactcctattcggccattaagatcaacggccagcgcgcctacgat
ctggcccgtgaaggcaagcaggtcgaactgaaggcccggccggtaaccgttgaggaattc
cgcgttgacgccgtgcggtacggctatgcgtcaacgagatttgcggatgcgccgttgacc
gatgcgcaggacatcggtgcaggggagcggtggcatcctgtctcggccgctccggatgtg
cggccggtcatggaactggacgttgcggtgagttgctccgcaggtacctatatccgtgcg
ttggggcgcgatttgggtgaggcgcttggccttggcggatacctgaccatgctgcgccgc
attcgcatcggcgactttaccgaaaccatgccgaacatcgtcaccgcgcacaccgaatcc
aaaaccttcaccaatcgggaaggcgcggaagtcacacgtaatcgtgccgtaatcgacgat
gccgagcatctgaccgaccgtgcactcggcatggtcgacagcgccaaagcgtccatgccc
atgctgcgaatcagcgatcaggaggcgactgacctgcgcttcggccgcagaatcgcccat
gacatccgtgagactacggccgcatacgtgcccgaaaccggcgatctggtggccatcatc
gagcgcgccaaacgaggcgaagccaagccggtggccgtattcgtacaacaacaagaagga
caacgatga

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