Bifidobacterium dentium Bd1: BDP_1012
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Entry
BDP_1012 CDS
T01143
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bde
Bifidobacterium dentium Bd1
Pathway
bde03420
Nucleotide excision repair
bde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BDP_1012 (pcrA)
03430 Mismatch repair
BDP_1012 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bde03400
]
BDP_1012 (pcrA)
Enzymes [BR:
bde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BDP_1012 (pcrA)
DNA repair and recombination proteins [BR:
bde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BDP_1012 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
BDP_1012 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
CarD_TRCF_RID
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADB09655
UniProt:
D2QA19
LinkDB
All DBs
Position
1142380..1145037
Genome browser
AA seq
885 aa
AA seq
DB search
MSRRKVEPVQQNMGPVLCDPQTLIKDLNPQQSEAVKYYGQALLIGAGAGSGKTRVLTRRI
AWLLAHGIWASQILAITFTNKAAAEMRERLAAIVGPEAERMWISTFHSACVRILRRDGDQ
IGLKSGFSIYDTADSERLIKLIGADLNIDLKRYTPRMILGKISDYKNSLISWKDQLKTYA
ADYRPGQRGYQLGRFDNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELLRTCPQASD
YYRHKFRYIFVDEYQDTNHAQYVLVRELSGIDSGEQADPHATGAGRVGPSWVTVVGDSDQ
SIYAFRGADIRNIQDFEEDFPNAKTIMLEQNYRSTQTILDAANAVIAKNENRKPKKLWTA
LGKGDPIIGYAADNAQQEAGYIASEITRLHTEEGIAYSDMAIMYRANAQSRSLEEAMINA
NLPYQLVGGTKFYERREVKDAIAYLQAIVNPADDVNMRRILNVPKRGLGARAEGLVAMYA
DRHGTTFFDGIEHLDQIEGMTGRTAKPLGAFRDLMHELVDFAKAHDAKPSEVVAEVLSRS
GLLEELQRSEDPQDASRVDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGEN
EDSGKVTMMTLHTAKGLEYPVVFLTGMEQGTFPHSRAMEDTSELSEERRLAYVGITRAKR
RLYVTRAAVRAQWGQANEMMPSQFLDEIPEDLIDWKRKEAGMERMRGGWQSGFDDDDEFG
GWGDDDFGTSSFGGSGYGSRGGSYGGTTSYGSRSSYGGSSYGSSSSRGGSSYGSGRAAYG
SSSRSSYGSSSYGSGKSAKAGKVTTRHTKPKALDKPRTTPASALSKDNNLNIEDFHIGDK
ITHDQYGLGTIVDTQDKGRNSVITVDFGTDGIKRLMLRVAPIEKL
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaaggaaagtggaaccggtgcagcagaacatgggacccgtcttgtgcgatccg
caaacgttgatcaaggatctcaatccgcagcagagcgaagcggtgaagtactacggtcag
gcattgcttatcggcgcaggtgcgggatcaggcaagacccgtgtgctgacacgccgtatc
gcatggcttctggctcatggcatctgggcaagccagattctcgccatcactttcaccaac
aaagccgcggccgagatgagggaacgtctcgccgcaatcgtcggaccggaagccgaacgc
atgtggatttcgacgttccattccgcctgcgtgcgcatcctgcgacgcgacggcgaccag
atcggcctgaaatccggattctccatctatgacaccgctgacagtgaacgactgatcaag
ctgatcggcgccgatctgaacattgacctgaagcgctatacgccgcgcatgattctcggc
aagatctccgactacaagaactcactgatctcgtggaaggaccagctcaagacctatgcc
gccgattaccggccggggcaacgcggctaccagctgggacggttcgacaacgtcgaggaa
ctgttcgccgtggtgtactccgaataccagtaccgtctggcccaggccaacgccgtggac
ttcgacgatctgattatgcgcaccgtcgaactgctcagaacgtgcccgcaagcgagcgat
tattaccggcacaaattccgttacattttcgtggacgagtatcaggacaccaatcacgcc
caatacgtattggtgcgtgaactttccggcatcgattcgggcgagcaggccgatccgcat
gccacgggcgcgggccgggtcggaccctcctgggttaccgtcgtcggtgactccgatcag
tccatatacgccttccgcggcgccgacatccgcaacatccaggatttcgaagaggacttc
ccgaacgcgaagaccatcatgctcgaacagaactaccgttcgacgcagaccattctggat
gcggcgaatgcggtgatcgcgaagaacgagaaccgcaagccgaagaaactgtggaccgca
ctcggcaaaggcgatccgatcatcggctatgcagccgacaacgcgcagcaggaggccggc
tatatcgcatccgaaatcacaaggctgcatacggaggaaggcatcgcctacagcgacatg
gccatcatgtaccgggccaacgcgcaatcgcgttcactggaagaggcgatgatcaacgcc
aacctgccataccagttggtaggaggcaccaaattctacgaacgcagagaagtcaaggac
gccatcgcatatttgcaggccatcgtgaaccccgccgacgacgtgaacatgcgtcgcatc
ctgaacgtgccgaaacgagggctgggcgcccgtgcggaagggctggtcgccatgtatgcg
gatcggcatggcacgacgttcttcgacggcatcgaacatcttgaccagatcgaaggcatg
accggacgaacggcgaagccattgggagcgttccgcgacctgatgcacgaattggtcgac
tttgcgaaggcgcatgacgccaaaccatccgaagtggtggcggaggtgctgtccagaagc
ggacttctggaggaactgcaacgctccgaagatccgcaggacgcctcacgcgtggataat
ctttcgcagctgcaatccgtagcggcggaattcgaacagaacacgccggacgccacattg
gcgggattcctggaaaccaccgcattggtggcggattccgatcagttgcccggtgagaac
gaggattccggcaaggtcacgatgatgaccctgcataccgccaagggccttgaatatccg
gtcgtgttcctcaccggcatggagcagggtaccttccctcattcacgagccatggaagat
acgagtgagctttccgaggaacgtcgtcttgcctatgtgggcatcacccgtgcgaaaagg
cgtctgtatgtgacccgagcggcggtgcgtgcgcaatggggacaggccaacgaaatgatg
ccaagccagttcctcgatgagattccggaggatctcatcgattggaagcgtaaggaagcc
ggcatggaacgcatgcgcggcggttggcagagcggcttcgacgatgacgacgaattcggc
ggttggggcgatgacgacttcggcacctcgtcgttcggcggctccggatatggctcacgt
ggcggatcctatggtggaacgacctcatacggttctcgctcttcgtatggaggatcgtca
tatggctcgtcatcctcccgtggtggctcgtcctacggttcgggccgtgccgcgtacggt
tcgagttcgcgatcctcgtacggatcgtcttcctacggttccggcaagtccgctaaggcc
ggcaaggtgaccacccgtcacaccaaaccgaaggcgcttgacaaaccgagaaccacaccc
gcctccgcactgagcaaggacaataacctcaatatcgaggatttccatatcggagacaag
atcacgcacgaccagtatggcttgggcaccatcgtcgatacgcaggacaagggccgcaat
tccgttatcaccgtggatttcggcacggatggcatcaagcggctgatgctgcgcgtggcg
cctatcgaaaagctctga
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