Bifidobacterium dentium Bd1: BDP_1264
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Entry
BDP_1264 CDS
T01143
Name
(GenBank) Glycine/serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
bde
Bifidobacterium dentium Bd1
Pathway
bde00260
Glycine, serine and threonine metabolism
bde00460
Cyanoamino acid metabolism
bde00630
Glyoxylate and dicarboxylate metabolism
bde00670
One carbon pool by folate
bde00680
Methane metabolism
bde01100
Metabolic pathways
bde01110
Biosynthesis of secondary metabolites
bde01120
Microbial metabolism in diverse environments
bde01200
Carbon metabolism
bde01230
Biosynthesis of amino acids
bde01240
Biosynthesis of cofactors
bde04981
Folate transport and metabolism
Module
bde_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
bde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
BDP_1264
09102 Energy metabolism
00680 Methane metabolism
BDP_1264
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
BDP_1264
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
BDP_1264
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
BDP_1264
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
BDP_1264
Enzymes [BR:
bde01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
BDP_1264
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Beta_elim_lyase
Aminotran_5
DegT_DnrJ_EryC1
SelA
Motif
Other DBs
NCBI-ProteinID:
ADB09883
UniProt:
D2QAP7
LinkDB
All DBs
Position
complement(1418955..1420262)
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AA seq
435 aa
AA seq
DB search
MTASPLAQTPNDMFNAPIAQADPEIAAVLDAELSRQQDGLEMIASENFVPRAVLQAQGSV
LTNKYAEGYPGRRYYGGCEQVDKIETIARERAKSLFGAEYVNVQPHSGAQANAAVYQALV
KPGDTVLGLALDHGGHLTHGMKINFSGRFYHAEAYGVNPETFRIDPEIIRQRALETHPAM
IIGGWSAYPRIEDFKAMKEIADEVGAKFWVDMAHFAGLVAAGLHPSPVPYADVVSSTAHK
TLGGPRSGFILAKQDYAKKLNSAVFPGQQGGPLMHVIAGKAVAFKVAASEEFKDRMQRTL
DGAKILAERLTADDVKNNGISVLTGGTDVHLVMVDLRNSEMDGQQGEDLLAQCGITINRN
TVPFDPRPASVASGLRIGTSALATRGFGSKEYEEVADIIGTALAAGKDANVDALKARVDK
LAEDFPLYPGLDQIH
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcatcacctctcgcccagaccccgaacgacatgttcaatgcccccatcgcccag
gccgatcccgaaatcgccgccgtgctcgacgccgaactgtcccgtcagcaagacggcttg
gagatgatcgcctccgaaaacttcgtgccacgtgcggttctgcaggctcagggctccgtg
cttaccaacaagtatgccgaaggctatccaggacgtcgttactatggcggctgcgaacag
gtcgataagatcgagaccatcgcacgtgaacgcgccaagagcctgtttggcgccgaatac
gtcaacgtccagccccattccggcgcccaagccaatgcggccgtctaccaggcgctcgtc
aagcccggagacacggtactcggtctggccctcgatcacggcggacatctcacccacggc
atgaaaatcaatttctccggccgtttctaccatgccgaagcctatggtgtgaaccctgaa
accttccgcatcgatccggaaatcatccgtcagcgcgcactcgaaacccaccccgccatg
atcatcggcggctggagcgcctacccgcgcatcgaagacttcaaagccatgaaggaaatc
gccgacgaagtcggcgccaaattctgggttgacatggcccacttcgccggccttgtcgcc
gccgggctgcacccaagcccggtcccatacgccgacgtcgtttcctccaccgcgcacaaa
accctcggcggaccacgttccggcttcatcctcgccaagcaggactatgccaagaagctc
aactccgccgtattccccggacagcagggcggcccactcatgcatgtgatcgcaggcaag
gccgtcgccttcaaagtcgcggcctccgaagaattcaaggaccgcatgcagcgtaccctc
gacggcgccaagatcctcgcagaacgcctcactgccgacgacgtcaaaaacaatggcatc
agcgtcctgacgggcggcaccgacgtgcacctagtcatggtcgacctgcgtaacagcgaa
atggacggacagcaaggcgaagacctgctcgcacaatgcggcatcaccatcaaccgcaac
accgtgccgttcgacccacgcccggcatccgtggcatccggcctgcgcatcggcaccagc
gccctcgccacccgaggcttcggatccaaggaatacgaagaggtcgccgacatcatcggc
accgcgctcgcagccggcaaggatgcgaacgtagacgcactgaaggcccgtgtcgacaag
cttgccgaagacttcccgctgtacccgggcctcgatcagatccactga
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