Bifidobacterium dentium Bd1: BDP_1585
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Entry
BDP_1585 CDS
T01143
Symbol
dnaE
Name
(GenBank) DnaE DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bde
Bifidobacterium dentium Bd1
Pathway
bde03030
DNA replication
bde03430
Mismatch repair
bde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BDP_1585 (dnaE)
03430 Mismatch repair
BDP_1585 (dnaE)
03440 Homologous recombination
BDP_1585 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bde03032
]
BDP_1585 (dnaE)
03400 DNA repair and recombination proteins [BR:
bde03400
]
BDP_1585 (dnaE)
Enzymes [BR:
bde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BDP_1585 (dnaE)
DNA replication proteins [BR:
bde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BDP_1585 (dnaE)
DNA repair and recombination proteins [BR:
bde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BDP_1585 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
tRNA_anti_2
DUF5487
Motif
Other DBs
NCBI-ProteinID:
ADB10179
UniProt:
D2Q5G4
LinkDB
All DBs
Position
complement(1777106..1780672)
Genome browser
AA seq
1188 aa
AA seq
DB search
MQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVNAGIKPII
GIEAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWAETDEGLV
NLMKASTDANLEGRVMRYPRMDKEILSKYSKGIIASSGCPSGIIQTRLLLGQFDEALRAA
GELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVRAEDAGAQD
AMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAERCNVMFDDH
EDGAFMPQFDCPEGWDETSLFLKKVEEGLEKRYDGNPPIEVLKQADYECGVICQMQFCGY
FLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPIQHGLIFERFLNPERVSLP
DIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGFDFSMGERVT
KALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDAKRVTDEAMGIEGLIRQTG
VHACATIMGSEPITNTSPLLERTDGTVTTTLEYHTCETLGLVKMDFLGLSNLTVIRDTLN
NIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSDGMRSLLKTLKPSNFNDISAL
IALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLDETYGLIVYQEQVQSAAR
ILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSQEAAQAVWDILVPFSGYA
FNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTALYLGEARRMGIQVLSPD
VNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESGHGKYVNFPDFVRRVPLSALN
RRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRKQAEGQFDLFSDLDDSAEQDG
MGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLSSLREMSIAHLIDRAGT
MPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQCMFFGKVYEAAAPELAVDTV
VQIRGQVERRDETVSLRATEFQVPTLEAEDERPLVITLPQVALNRDHVMRLGRILNDHPG
YCEVRLAIMDDQGNAKVLTFGDRFRVKRDTSLFAEIKILFGPSSLPMA
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
gtgcaactgcataaccatacgcactattcgctgctcgacggcgcttcgaagataccggat
ctggtcaaacgcgccaaggaactgaacatgccggccgtcggcatcacggatcatggcaac
atgcatggcgcctatgagatgtggagcaccgcagtcaatgcgggcatcaagccaatcatc
ggcatcgaagcctatgtcacgccggaaaccgcacgccaggacccgacccgagtgagctgg
gataccaactggaacccggatcttgacccgaaccatcgcaaacgcaaccccaacgacgtg
tccggcggcggcctgatcacgcatctgaccatgtgggcggagaccgacgaaggcctcgtg
aacctcatgaaagcctcgaccgacgcgaacctggaagggcgtgtcatgcgttacccgcgc
atggacaaggagatcctatccaagtattccaaggggattatagcctcatccggttgccct
tcgggcatcatccaaacccgattgctgctcggtcaattcgatgaggcactacgtgcggcg
ggggagctgcaggacatcttcggccgagacaacttctacatcgaattcatggaccacggg
ctgaatatcgaaagacaggtgaccgacgggctgcttgacatcgccaaaaagctcaatgcg
ccgttgctggcgaccaacgattcccattacgtgcgtgcggaggatgccggcgcgcaggac
gccatgctgtgcatcaactccggctccaccctcgacgagccgggacgattcaagttcgac
ggtaccggctactacctgaaatccgccgaagagatgcgtgaactgttcaaggaccttccc
gaggcatgcgacaatacgctggagatcgccgaacgctgcaacgtgatgttcgacgatcat
gaggatggcgccttcatgcctcaattcgactgccccgaaggatgggacgagacctcgctg
ttcctgaagaaagtcgaagagggcctggaaaagcgatatgacggcaatccgccgatcgag
gtgctcaagcaggccgactacgaatgcggcgtaatatgccagatgcagttctgcggttac
ttccttgtcgtggccgactacatcaactgggccaagacgcacggtgtgatggtggggccc
ggccgtggttccgctgcaggcgccatggtggcatacgccatgggcatcaccgaactcgac
ccgatccagcacggtctgattttcgaacgcttcctcaatccggagcgagtctccctgcct
gatatcgacgtggatttcgatccggacggccgcggccgcgtactcgactatgtcggcgag
aaatacggtcgtgacaaggtggcgcaatgcgtgatctacggcaccatcaaaaccaagcag
gccttgaaggattccgcacgcatcatgggcttcgacttttccatgggcgagcgcgtgacc
aaggcgttgccaccggcgcagacgggcggcaaggacatcccgttgcacgatatcttcgat
ccggcctcgaaacgctatgccgaagcgcgtgagttccgggagctgtacgattccgatccg
gatgccaagcgtgtgaccgatgaggcgatgggcatcgagggtctgattcgtcagaccggc
gtgcatgcctgcgccaccatcatgggtagtgagccgattaccaacacctcgccgctattg
gaacgtaccgacggtaccgtcaccactacgctcgaatatcacacgtgcgaaacgctgggt
ctggtcaagatggacttcctcgggctctccaacttgacggtgattcgtgacaccctgaac
aacatcgaggcgaacggcaaggaccgcatcgaccataccaggattcctttggatgacaag
gccacgtacgagttgctgtcgcgaggcgacacccttggcgtgttccagctcgattccgac
ggcatgcgctcgctgctgaaaacgttgaagcccagcaacttcaacgatatctccgcgttg
atcgccttgtaccggccgggccctatggatatggattcgcataccaactatgcgaagcgt
aagaacggcctgcagaagatcacgccgattcatcccgaagtggccgaaccgctcaaggag
gtgcttgacgagacctatggtctgatcgtgtaccaggagcaggtgcagtcggccgcgcga
attctggcgggttactctttgggtaaggcagatgtgttgcgccgagccatgggcaagaag
aagccggaagtgttggccaaggagaaaatcccgttctttgcgggcatgaaggagcatggc
tactcgcaggaggcggcccaggccgtgtgggacattctggtgccgttctcggggtatgcg
ttcaacaaggcgcattccgccgcatacggtttgatctcctattggaccgcgtatctgaag
acgcactatccggtggaattcatggccgccctgctacagggcgccagcaccaataaggac
aagaccgcactgtatctcggcgaggcgcggcgcatgggcattcaggtgctgtctccggac
gtgaatgagtcggtattcgaatattcggcggtcggcgatgtcgtgcgattcggtctcggt
gccatccgcaatgtcggcaggaacgccgtcgatgacatcatcaaggagcgcgagagcggt
catggcaagtatgtgaacttcccggatttcgtgcgtcgcgtgccgttgagtgccttgaac
cgtcgtctggtggaatcgttgatcaaggccggagccttcgattcggtcgatccgaaccgt
cgtgcgctgttcaccattcatgaggctgccatcaattcggtggtgggcatcaagcgcaag
caggcggaagggcagttcgatctgttctccgatctggatgattcggccgaacaagacggc
atgggagacgccatggtgagcgtgccggatgtggaggaatgggataagaaaaccaagctc
aacttcgagcgtgagatgctgggcctgtatgtgtccgaccatccgttgagcggcatgcag
tcggtgttgtcgagtctgcgtgagatgtcgatcgcgcatctgatcgatcgcgccggaacc
atgcctgacgggcagcaggtcacggtagccgggctgattacgaatgtggaccgtcgcgta
tcgaagaagggcaatccttgggcgatcgtcaccatcgaggatttggaaagctccatccag
tgcatgttcttcggcaaggtatatgaagcggccgcgccggaactggcggtcgacaccgta
gtgcagatccggggccaagtcgagcggcgcgacgaaaccgtgagtctgcgtgccacggaa
ttccaggtaccgaccttggaggcggaggacgagaggccgctcgtgatcacgctgccgcag
gttgcactgaaccgtgatcatgtgatgcggctcgggcggattctgaacgaccatcccggc
tattgcgaggtgagacttgccatcatggacgatcagggcaacgccaaggtgctgaccttc
ggcgatcgcttccgcgtgaagcgggacacctccctgttcgccgagatcaagattcttttc
ggtcccagctccttgcccatggcctga
DBGET
integrated database retrieval system
