Bifidobacterium dentium Bd1: BDP_1624
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Entry
BDP_1624 CDS
T01143
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bde
Bifidobacterium dentium Bd1
Pathway
bde03420
Nucleotide excision repair
bde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BDP_1624 (pcrA)
03430 Mismatch repair
BDP_1624 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bde03400
]
BDP_1624 (pcrA)
Enzymes [BR:
bde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BDP_1624 (pcrA)
DNA repair and recombination proteins [BR:
bde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BDP_1624 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
BDP_1624 (pcrA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
Viral_helicase1
AAA_30
EstA_Ig_like
Motif
Other DBs
NCBI-ProteinID:
ADB10216
UniProt:
D2Q5K1
LinkDB
All DBs
Position
complement(1820872..1822380)
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AA seq
502 aa
AA seq
DB search
MVHMDASAETILEGLDDAQRTAATTVNGPVRIIAGAGAGKTRTVTRRIAYACATGEWDPR
RALAVTFSVKAAAEMRSRLSQLEVDGAVKAATFHSAALHQIRRVWPDLCEGPFPHISRQP
RELVARSLRRVTTMQVDDETVRNLQAEINWCKISLVSPNDYQRVCAATHRQPPAGLEPDQ
FTDVYQAYETEKTARGEIDFDDILLIACHVLESYDEASAAIRSSIGWLTVDEYQDVSPLQ
HRLLTRWLSGNRNICVVGDPAQTIYSFAGASSYSLLDFAGEFGPLSADISLNRDYRSTPQ
IVNYANRVLKASPQRDDYLVLQSGREQGPRVTQTVYASDTEEAQGVAMRIAKLASQGVSP
SDCAILTRINAQQQILCKALQEQHLRYRIRRDSGWQNSALADDAQTRLAMLEALGVGSDM
NGVTISTIHASKGLEFKHVFLIGCSEGLLPYGSPQDGDQLEEERRLLYVGVTRAEDTLHL
SYARSKDGLNDGRGRRVSRFLS
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggtgcatatggacgcatccgcagagacgattcttgaagggctggacgatgcgcaacgg
accgcggccacgacggtgaacggacccgtacgcatcatcgcaggcgcaggggcgggcaaa
acccgtaccgtcacgcgccgtatcgcctatgcatgcgccaccggcgaatgggatccacgg
cgtgcactcgccgtgaccttctccgtaaaggccgcagcggaaatgcgttccagactgtcg
caactcgaagtcgacggcgcggtcaaggccgcaacgttccattccgcggcactgcatcaa
atccgtcgcgtatggcccgacctgtgcgaaggaccgtttccgcacatcagcaggcagcca
agggaattagtggcgcgttcgctgcgcagagtcaccaccatgcaggtcgatgacgaaacg
gtacgcaatctacaggcggaaatcaactggtgcaagatctccctggtctcaccgaacgac
taccaacgcgtatgcgcagccacgcatcgacaacctccggcagggcttgaacccgatcag
ttcacggacgtgtatcaggcatacgaaaccgaaaagacggcgcgcggcgaaatcgacttc
gacgacatcctgctcatcgcatgccatgttctggagagctatgacgaagcatcagccgcc
atccgctcatccatcggatggctcaccgtcgacgaataccaggacgtttcgccactgcaa
catcgcctgctgacacgatggctgagcggcaaccgcaacatttgcgtggtaggcgacccc
gcgcagaccatctactcgtttgctggggccagcagctacagtctgctcgatttcgccggt
gaattcggtccgctttcggccgatatcagcctgaacagagactatcgttccacaccgcag
atcgtgaactacgccaatcgagtactcaaagcgtcaccgcagcgggacgactatcttgta
ctgcaatccggtcgggaacaaggcccgagggtcacacagaccgtatacgccagcgatacg
gaagaggcgcagggcgtggccatgcgcatagccaaactcgcctcgcagggggtatctcct
tccgactgtgcgattctgacccgcatcaacgcacagcaacagatcctctgcaaggcattg
caggaacagcatctgcgctatcgcattcgccgggatagcggatggcagaactccgcgctc
gctgatgacgcgcagacgcgcctggccatgttggaggcgttgggtgtcggctcggacatg
aacggtgtgaccatctccaccatccatgcctccaaaggcctggaattcaagcatgtgttc
ctgatcggctgttccgaaggactcctgccatacggttcgccgcaggacggcgatcagctg
gaggaggaacgacgtctgctgtacgtgggcgtgactcgcgccgaagacaccctgcatctg
tcgtatgcacgctccaaagacggcctcaacgatggtcgaggccgtcgggtcagccggttc
ctgagctga
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