KEGG   Bifidobacterium dentium Bd1: BDP_1641
Entry
BDP_1641          CDS       T01143                                 
Symbol
cds1
Name
(GenBank) CRISPR-associated RAMP Csd1 family protein
  KO
K19117  CRISPR-associated protein Csd1
Organism
bde  Bifidobacterium dentium Bd1
Brite
KEGG Orthology (KO) [BR:bde00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:bde02048]
    BDP_1641 (cds1)
Prokaryotic defense system [BR:bde02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Subtype I-C factors
    BDP_1641 (cds1)
SSDB
Motif
Pfam: Cas_Csd1 pXO2-29_C
Other DBs
NCBI-ProteinID: ADB10233
UniProt: D2Q5L8
LinkDB
Position
complement(1839952..1841841)
AA seq 629 aa
MSLWSSLLETYDEVQNASGRGHQGYGNGDEAKKILLPLDHMSMPGQLRVILKSDGCLESI
KKEAVAWTMIIPCTEESMGRTSKPVPHPLCDQLQYVDKVCDAKRTCMYLDQLAKWKGDDE
KLNAIYRYVSEHSISKDAIQYGIQLTGRDEKIGVCFEVEIPGKACRPVADDPEIRNRWIE
FQQREHAWAGTDIFGRDFYSQASNYPKNIVSTAGNAKLISANDNTNFTYRGRFGNRDEAL
RIDSETSQKIHSTLRWLVNNHATITDTQAIIIWAVKKPEENVVNPELNFAETLSHMLLNS
ESEQHDVVQDALIATDMNYAKRFRALLRGYGSPDFLQKHANKMAIVILDAATSGRLSVTF
YRELRENEYLENILKWHTDTAWPLTYFERNQNGDKTSFKRTPYIGAPSFVDIINCTYDAS
DRSSKSYKRYAKYMKKRLIECMFGDRALPISILNAAFHKVTRPISYNEGDLVWERDFEIA
CSLWKKHFNDEAKRHHDSKEVSMELNLERKDRDYLYGRLLALADYFERGVLLKQQVDRPT
NAVKLMSNFIAKPYSTWGALWKQLIPYLKTMNGAEWFQSGIDDVMALFEEGDFEDNKTLS
PLFLLGYSSQRRSLRNPTRLHKDESDKQN
NT seq 1890 nt   +upstreamnt  +downstreamnt
atgagtctgtggtccagcttacttgagacgtatgatgaagtacagaacgcttcggggcgt
ggacatcaaggctacggcaatggcgatgaggcgaaaaaaatcctattaccgcttgatcat
atgtctatgcctggccagttgcgtgtgattctgaaatccgatggctgtcttgagagtata
aaaaaggaagcagttgcatggacaatgattattccttgtaccgaggaatcgatgggaaga
accagtaaacctgttcctcacccattatgtgatcagctgcaatatgtggataaagtctgc
gatgctaagagaacttgtatgtatctggaccaacttgcaaaatggaaaggcgatgacgag
aaattaaatgcgatttaccggtatgtatctgagcatagtattagcaaagatgcgatacaa
tacggtatacagttgaccggtagagacgagaaaattggtgtatgtttcgaggtcgagata
cctgggaaagcgtgtcgcccggttgccgatgatccagaaattaggaatcgatggattgaa
ttccagcagagagagcatgcttgggctggtaccgatatctttggaagagatttttactca
caggcttcaaactatcctaagaacatcgtcagcactgcgggaaacgcgaaactcatctcg
gcaaatgacaatacgaatttcacttatagagggcgttttgggaatagggatgaggcattg
agaattgactcggagacttctcaaaagattcattccacactgcgttggcttgtaaacaac
catgcaacgattacggatacgcaagccatcatcatctgggcggtaaagaaacctgaagag
aacgtagtgaatcccgagctaaatttcgctgagactcttagccatatgctgttgaatagc
gaatcagaacaacatgatgtggtgcaagatgcgcttatagcaacagatatgaactacgcg
aagagatttcgtgcgttactgcgggggtatggcagtccggattttttgcagaagcatgca
aacaagatggcgatagtcattcttgatgctgcgacatccggacgactaagtgttacgttc
tatcgtgaattacgagaaaacgagtatcttgaaaacattttaaaatggcatacggataca
gcgtggcctttgacttattttgaacgaaatcaaaatggagacaaaacatccttcaaacga
accccttatataggggcaccgtctttcgtcgatattatcaattgcacatacgatgcttca
gatcgtagtagcaagagctacaaaagatatgctaaatacatgaagaagaggcttatcgaa
tgtatgttcggtgatcgagctctacctatttcgattttaaacgctgcattccataaagta
actagaccgataagctataacgaaggcgatttagtctgggagcgtgattttgaaattgca
tgcagtctgtggaagaagcatttcaatgatgaagcaaagaggcatcatgatagtaaggag
gtatccatggaattgaatttggagcgaaaggatcgtgactatttatatggtcgactttta
gctctggctgattattttgagcggggtgtgctactgaaacagcaagtagatcgtcctaca
aatgcggtgaagttgatgagcaactttatcgcaaaaccatattcaacatggggagcctta
tggaaacaattgatcccgtatttgaagaccatgaatggagctgaatggttccagtccgga
atcgatgatgttatggctctttttgaggagggtgattttgaggataataagacactgtct
cctctattcctcttgggatattcttctcagcgccgctctttgagaaacccaacacgactg
cacaaagacgaatcagataagcagaactaa

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