Bifidobacterium dentium Bd1: BDP_1754
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Entry
BDP_1754 CDS
T01143
Name
(GenBank) Beta-lactamase domain-containing protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bde
Bifidobacterium dentium Bd1
Pathway
bde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDP_1754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bde03019
]
BDP_1754
Messenger RNA biogenesis [BR:
bde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BDP_1754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF459
Cuticle_1
Motif
Other DBs
NCBI-ProteinID:
ADB10343
UniProt:
D2Q5X8
LinkDB
All DBs
Position
complement(1989121..1990797)
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AA seq
558 aa
AA seq
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MRIVPLGGLGEIGRNMNVVEYNGHLLLIDCGVLFPEEEQPGVDLILPDFHYIKDRLDKVE
ALVLTHGHEDHIGGVPYLLKLRPDIPLIGSKLTLAFAEAKCKEHHINPTLVEVKGRDKLK
VGPYNLEFVNVTHSIPDALAVFVQTPAGSLIDTGDIKLDQLPLDHRITDLVEFGKLGEKG
VDLLMMDSTNAEVPGFVKPETSIGPALDQAFAQATRKIIVASFSSHVHRVQQVVDAAHKY
GRKVVFVGRSMVRNMSIAADLGYLRLPEDTVIDLKQSHDVQDDKLVYMCTGSQGEPMAAL
GRIADGNHRDITINEFDTVILASSLIPGNEHEVYKVINKLVQLGARVVNRDNAAVHVSGH
CNEGELLYMYNIVKPKCAMPIHGENRHLVANGMIAVKTGVDPQNVVLAEDGDVVDLYHGQ
AAVVGSVPCGYVYVDGDSVGELTDEELEKRRILGTEGFVSSFVVVDTETADVIAGPKIYL
NAVAEDESEFDKVRHQIVEQLRDAMMTGTHDTYKLQQLMRRTLGSWVARQLHRKPMIVPV
VADIAQDVDDAAGVTAAK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgtgccgctgggcggtttgggtgagatcggtcgcaatatgaacgtggtcgaa
tacaatggccacttgctgctcatcgactgcggtgtgctgtttccggaagaggagcagccg
ggcgtggacctgatcctgcctgacttccactacatcaaggatcgtctcgacaaggtcgag
gctctggtgctcacccacggtcatgaggaccacatcggtggcgtaccgtacctgctgaaa
ctgcgcccggacattccactgatcggctccaagctcacactggccttcgcggaggccaag
tgcaaggagcaccacatcaatccgacgcttgtcgaggtcaagggccgcgacaagctcaag
gtgggcccatacaaccttgaattcgtgaacgtgacccactccatcccggacgctctggcc
gtattcgtgcagactccggccggttccctgatcgacaccggcgatatcaaactcgaccag
ctgccgcttgaccatcgcatcaccgatctggtggaattcggcaagctcggcgaaaagggc
gtggaccttctgatgatggactccaccaacgccgaggtgccgggcttcgtcaagccggag
acctccatcggtccggcccttgaccaggcgttcgcgcaggctacccgcaagatcatcgtg
gccagcttctccagccacgtgcatcgcgtgcagcaggtcgtcgacgccgctcacaagtac
ggccgcaaggttgtgttcgtcggccgttccatggtgcgcaacatgtccatcgcagccgat
ttgggctacttgcgtctgccggaagacaccgtcatcgacctgaagcagtcccatgatgtg
caggacgacaagctcgtctacatgtgcaccggctcccaaggcgagccgatggccgccttg
ggccgtatcgccgacggcaaccaccgcgatatcaccatcaacgaattcgacacggtgatt
ctggccagctccctgatcccgggcaacgagcacgaggtctacaaggtcatcaacaagctc
gtgcaattgggtgcgcgtgtggtcaaccgcgataatgcggccgtgcacgtctccggccat
tgcaacgagggcgagctgctgtacatgtacaacatcgtcaagccgaagtgcgccatgccg
attcacggtgagaaccgtcacttggtggccaacggcatgatcgccgtcaagaccggcgtc
gatccgcagaacgtcgtgctggctgaagatggcgacgtcgtcgacctgtaccatggccag
gccgcggtcgtcggttccgtgccgtgcggctacgtgtatgtggatggcgattccgtcggc
gagcttacggatgaggagcttgagaagcgtcgtattctcggcactgaaggattcgtgtcc
agcttcgtggtcgtcgacaccgaaaccgccgatgtgattgcggggccgaagatctatctc
aacgccgttgccgaggatgaaagcgaattcgacaaggtgcgtcaccagatcgtcgagcag
ttgcgggatgccatgatgaccggtacccacgatacgtacaagctgcagcagctcatgcgc
cgcacgcttggcagttgggtggcccgtcagctgcatcgcaagccgatgatcgtgccggtc
gtggccgacatcgcgcaggacgtcgatgacgctgcgggcgtaactgcggccaagtga
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