Burkholderia diffusa: WI26_06975
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Entry
WI26_06975 CDS
T04698
Name
(GenBank) RNA-binding protein hfq
KO
K03666
host factor-I protein
Organism
bdf
Burkholderia diffusa
Pathway
bdf02024
Quorum sensing
bdf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WI26_06975
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
WI26_06975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdf03019
]
WI26_06975
03036 Chromosome and associated proteins [BR:
bdf03036
]
WI26_06975
Messenger RNA biogenesis [BR:
bdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
WI26_06975
Chromosome and associated proteins [BR:
bdf03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
WI26_06975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
SelB_WH1
Motif
Other DBs
NCBI-ProteinID:
AOI57368
LinkDB
All DBs
Position
1:complement(1530271..1530864)
Genome browser
AA seq
197 aa
AA seq
DB search
MANPAESHPQNDFINSARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGGGPRGPRTGGRPGGREGGGHSPYGSHGGAREARGDGGGYGSREP
REGYGSREPREGYGSREPREGYGAPREPREGYGAPRESYGAPRDAGDASGNTSPSDTRGG
NGPVIVTRRRRIVPDGQ
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atggccaatcccgcagaatcccatccgcaaaacgacttcatcaattcggcgcgcaaggaa
cgtaagcgtgttgaaatctatctcgtcaacggcattcgtctgacggggtgtatcgagtcg
ttcgaccagtacctggtgatgctgcgcacccccgtgggtctgcaaggcatctacaagcgt
gcgatttccacgatccagctcgacaccggcggttcgcgcccgggcggcggcggcccccgc
gggccgcgtaccggcggccggccgggcggccgcgaaggcggcggccacagcccgtacggc
tcgcacggcggcgcccgcgaagcgcgcggcgacggcggcggctacggctcgcgcgaaccg
cgtgaaggttacggttcgcgtgaaccgcgcgaaggttatggctcgcgtgaaccacgcgag
ggttacggcgcgccgcgcgagccccgcgaaggctatggcgccccgcgtgagagctacggt
gcaccgcgtgatgccggcgacgcatcgggcaacacgtcgccgtccgacacgcgcggcggc
aacgggccggtgatcgtcacgcggcgtcggcgaatcgtgccggacggccagtaa
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