Burkholderia diffusa: WI26_11235
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Entry
WI26_11235 CDS
T04698
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bdf
Burkholderia diffusa
Pathway
bdf03030
DNA replication
bdf03430
Mismatch repair
bdf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WI26_11235 (dnaE)
03430 Mismatch repair
WI26_11235 (dnaE)
03440 Homologous recombination
WI26_11235 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdf03032
]
WI26_11235 (dnaE)
03400 DNA repair and recombination proteins [BR:
bdf03400
]
WI26_11235 (dnaE)
Enzymes [BR:
bdf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
WI26_11235 (dnaE)
DNA replication proteins [BR:
bdf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
WI26_11235 (dnaE)
DNA repair and recombination proteins [BR:
bdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
WI26_11235 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
DUF655
Motif
Other DBs
NCBI-ProteinID:
AOI58131
LinkDB
All DBs
Position
1:complement(2430887..2434420)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGK
GIKPIAGCDVWITNPDDRDKPSRLLLLVKDKTGYLNLCELLSKAWLTNQYRGRAELDASW
LDGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYIELQRYGQPGAE
AYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQKRFTTDQY
FRTQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLEKRLEQLYPDAAEREAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSLAQVPLDDPASFQ
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE
IFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCIVNNLTVLPPDINQSHYRFEPVAEADGKRSRTIRYGLGAVK
GSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNANRAQMLA
SVPLAMEAADQAAANAMQAGLFDMGGESLHAHALVDEPAWDDKRRLQEEKGALGFYLSGH
LFDAYRDEVRRFVRQKLGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGSGQCEIT
IFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTMN
GNADAAALRRVLEPHVSKDDPAAVQAVEAPAPRGGGRDGGRRPQAPLPSGLAVQVHYSNA
RAQGEMRLGDAWRVKPSDTLLAELRATFDGSIVEITY
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccccgcttcgtccatcttcgcgttcactccgaattctcgattgccgacggc
atcgtgcgtctcgacgacatcgtcaaggcggcggccgcggacggtcagggcgcgctcgcc
cttaccgatctcggcaacgcattcggcctcgttcgtttctaccaggaagcccgcggcaag
ggcatcaagcccattgccggctgcgacgtctggatcaccaatccggacgatcgcgacaaa
ccgtcgcgcctgctgctgctggtgaaggacaagactggctacctgaatctgtgcgagctg
ctgtcgaaggcgtggcttacgaaccagtatcgcggccgcgcagagctcgacgcgagctgg
ctcgacggcgagctgtcccaagggctgctcgcgctgtcgggtgcgcagcagggcgatatc
gggctcgcgctcgcggccggtaacgaggaagccgcgcgccgtcatgccgagcgctgggcg
aaggtgttcccgggcggcttctacatcgagctgcagcgttacggccagccgggcgccgag
gcgtacatccagcaagccgcgacgctcgccgcgtcgctgaagctgccggtcgtcgcgacg
catccgacgcagttcatgaccgacgacgacttcaccgcgcacgaggcgcgcgtgtgcatc
tcggaaggcgacatgctcgcgaacccgcggcgccagaaacgtttcacgaccgatcagtac
ttccgcacgcaggacgacatggtcgcgctgttcgccgacctgccgtcggcggtcgccaac
acggtcgagatcgcgaagcgctgcaacctgaagctcgagctcggcaagccgaagctgccg
ctgtttccgacgccggacggcatgtcgctcgacgactacctggtccagctgtcgaaggaa
gggctcgagaagcgcctcgaacagctgtatccggatgcggcggagcgcgaagcgcagcgc
gacacgtattacaagcggctcgagttcgagtgcgggaccatcacgaagatgggcttcccg
ggctacttcctgatcgttgcggacttcatcaactgggcgaaaaacaacggcgtgccggtc
ggcccgggccgcggctcgggtgccggttcgctggtcgcgtacgcgctcggcattaccgat
ctggacccgctgcgctacaacctgctgttcgagcgattcctgaatccggaacgcgtgtcg
atgcccgacttcgacatcgacttctgccagcacggccgcgatcgcgtgatccagtacgtg
aaggaaaaatacggcgcggacgccgtgtcgcagatcgccaccttcggcacgatggccgcg
aaggcggccgtgcgcgacatcggccgcgtgctcgaccttggctacatgttcaccgacggc
gtcgcgaagctgattccgttcaagccgggcaagcacgtgaccatcgccgacgcgatgaag
gaagagccgcagctgcaggagcgctacgaccacgaggacgaagtgcaccagctgctcgac
ctcgcgcagcgcgtcgagggcctgacgcgtaacgtcgggatgcacgcgggcggcgtgctg
atcgcgcccggcaagctgaccgacttctgcccgctgtacacgcagggcgatgacggcggc
gtcgtcagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ctgggtctcacgacgctgacgatcctcgactgggccgagcgctacatccgccgtctcgat
gcgtcgaaggccgactggtcgctcgcgcaggtgccgctcgacgatccggcatcgttccag
atcctgaagaaggccaacacggtcgccgtgttccagctggaaagccgcgggatgcagggc
atgctgaaggacgcgcagcccgaccgcttcgaggacatcatcgcgctcgtgtcgttgtac
cgtccgggcccgatggacctgatcccgagcttctgcgcacggaagcacggccgcgagaag
gtcgagtatccggatccgcgcgtcgagcccgtcctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcg
gacttgctgcgtcgcgcgatgggcaagaagaagcccgaggagatggtcaagcaccgcgag
atcttcgccgagggtgcggcgaagaacggcctcacgcgcgagaagtccgacgagatcttc
gacctgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcggcctacgcg
ctgctcgcgtattacaccgcgtggctgaaggcgcaccatccggccgaattcatggcggcc
aacatgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgactgcatc
gtgaacaaccttaccgtgctgccgccggacatcaaccagtcgcattaccggttcgagccc
gtcgcggaagccgacggcaagcgctcgcgcacgattcgctacggtctcggcgcggtgaag
ggcagcggccagaacgcgatcgaggagatcctgcgcgcgcgcgaggaaaagccgttcacc
gacctgttcgatttctgcgagcggatcgaccggcgtgtcgtcaaccgccgcacggtcgag
gcgctgattcgtgccggcgcgttcgattcgctgaacgcgaatcgcgcgcaaatgctcgcg
tcggtgccgctcgcgatggaagcggccgatcaggccgctgcgaacgcgatgcaggccggc
ctgttcgacatgggcggcgagtcgctgcacgcgcatgcactcgtggacgaacccgcttgg
gacgacaagcgccgcctgcaggaagagaagggcgcgctcggcttctacctgtccgggcac
ctgttcgatgcatatcgcgacgaagtgcgccggttcgtgcgacagaagcttggcgacctg
aaggaagggcgcgacaagctcgtcgcgggcatcatcgcatcgctgcgcacgcagatgacc
cagcgcggcaagatgctgatcgcattgctcgacgacggttcaggccagtgcgagatcacg
atttttaacgaacagttcgaggcgaacaaggcgctgttcaaggaagacgaactgctgatc
gtgcaggggcaggcgcgcaacgatgcgttcaccggcggcatccgtttcacggccgacacg
gtgatggatctcgagcgcgcgcgcagccgctacgcgcaggcggtgcggctcacgatgaac
ggcaatgcggatgcggcggcgctgcgccgcgtgctcgagccgcacgtgtcaaaggacgat
ccggcggccgtgcaggcggtcgaggcaccggcgccgcgcggcggcgggcgcgacggcggc
cgtcgcccgcaggcgccgctgccgagcgggctcgcggtccaggttcactacagcaatgcg
cgcgcgcagggtgaaatgcgtctcggcgacgcgtggcgcgtcaaaccgagcgacacgctg
ctcgcggagttgcgcgcgacgttcgacggcagcatcgtcgaaatcacgtactga
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integrated database retrieval system
