Burkholderia diffusa: WI26_11250
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Entry
WI26_11250 CDS
T04698
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bdf
Burkholderia diffusa
Pathway
bdf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WI26_11250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdf03019
]
WI26_11250
Enzymes [BR:
bdf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WI26_11250
Messenger RNA biogenesis [BR:
bdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WI26_11250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AOI58134
LinkDB
All DBs
Position
1:complement(2436658..2438205)
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AA seq
515 aa
AA seq
DB search
MSAGPAGLTHDVPAAPFERNATMSDSVAKPVDATFDQFGLAADILKAIAEQGYTTPTPIQ
AQAIPVVLAGRDVMGAAQTGTGKTASFSLPILQRLLPQANTSASPARHPVRALILTPTRE
LADQVAANVHAYGKHTSLRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTAN
LGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQ
TIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIVFCNSKIGASRLARNLE
RDGVVASAIHGDKSQIERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNA
EDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLDVQTLALDKPARHRHDER
GGERGAERGGERGGRRERDEHRGASARRSGGSERGGHHRRHEAPVDDFFLKPYEPSAPAQ
QPEESKSAQQPEKKGPKRQVAALLGGFGMPRKPSA
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaggcccggccggcctgacgcacgatgtccccgccgcgccttttgagcgaaac
gccaccatgtccgattctgtcgccaagccagtcgacgcaaccttcgatcaattcggcctt
gccgccgatatcctgaaagccattgcggagcagggctatacgacgccgacgccgatccag
gcgcaggccattccggtcgtgctcgccggccgcgacgtcatgggcgccgcgcaaacgggc
accggcaagaccgcgagcttctcgctgccgatcctccagcggctgctgccgcaggccaac
acgagcgcatcgcccgcgcgccatccggtgcgcgcgctgatcctcacgccgacccgcgag
ctcgccgaccaggtcgccgcgaacgtgcatgcgtacgggaagcacacgtcgctgcgcagc
gcggtcgtgttcggcggcgtcgacatgaacccgcagatggccgagttgcgccgcggcgtc
gagatcctgatcgcgacgccgggccgcctgctcgaccacgtgcagcagaagacggcaaac
ctcgggcaggtgcagatgctcgtgctcgacgaagccgaccggatgctcgacatgggcttc
ctgccggacctgcagcgcatcctgaacctgctgccgaaggagcgtcagacgctgctgttc
tcggccactttctcgccggaaatcaagaagctcgcatcgacctacctgcgcaacccgcag
acgatcgaggtcgcgcgcagcaattcgacgaacgcgaacgtcacgcagatcgtctacgac
gtcgccgagggcgacaagcaggccgcggtcgtgcagctgctgcgcgatcgcgggctcaag
caggtgatcgtgttctgcaacagcaagatcggcgcaagccggctggcgcgcaacctcgag
cgcgacggcgtggtcgcgtcggcgatccacggcgacaagtcgcagatcgagcggatgcag
gcgctcgacgcgttcaagcgcggcgaaatcgaggcgctggtcgcgaccgacgtggccgcg
cgcggtctcgacatcgccgaactgccggccgtgatcaacttcgacctgccgttcaacgcg
gaagactacgtgcaccgcatcggccgcacgggccgcgcgggcgcgacgggcgatgcgctg
tcgctgtgcagcccgaacgagcgcaagcagctcgccgatatcgagaagctgatcaagcgt
ccgctcgacgtgcagacgctcgcgctcgacaagccggcgcgccatcgtcacgacgagcgt
ggcggcgagcgcggggcggagcgtggcggcgaacgtggcgggcgccgcgagcgcgacgag
catcgcggtgcgtcggcgcgtcgttccggcggttccgagcgtggcggccatcaccgtcgc
cacgaggcgccggtcgacgatttcttcctgaagccgtatgaaccgtcggcgccggcgcag
cagccggaagagtcgaagtccgcgcagcaacccgagaagaaggggccgaagcgtcaggtc
gccgcgctgctcggcggcttcggaatgccgcgcaagccgtcggcgtaa
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