Burkholderia diffusa: WI26_29235
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Entry
WI26_29235 CDS
T04698
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bdf
Burkholderia diffusa
Pathway
bdf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WI26_29235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdf03019
]
WI26_29235
Enzymes [BR:
bdf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WI26_29235
Messenger RNA biogenesis [BR:
bdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WI26_29235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
Motif
Other DBs
NCBI-ProteinID:
AOI61753
LinkDB
All DBs
Position
3:complement(573158..574597)
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AA seq
479 aa
AA seq
DB search
MSFASLGLIDPLLRNLQGLNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL
QRLVRHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPVQR
QTLLFSATFTDDIRAMAASILRDPVNISVSPPNVTASKIKQWVVPVDKRNKPDLFMHLVA
ENNWGHALVFVKTRNGVDYLAAMLNDAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLRREEEPGFEAEHRVPETSATGQIIKKPKKPKKPKVPQAGMSAMPAAGKKPRPQ
GGEGKRKSAGQRAGAAGKATSLSSGSPFSVQKPRGKPAGKAAAGARKPAGKPAGGRGTR
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgctaggcctgatcgatcccttgctgcgtaatctgcagggcctcaat
taccagacacccacgccggtgcaggccaaggcgattcccgctgtactcggcggcaaggac
gtcatggccgcggcacagaccggcaccggcaagacggcgggtttcgcgctgccgctgctg
caacgactggtgcggcacgggccggcggtgtccagcaaccgtgcgcgcgttctcgtgctg
gtgcccacgcgcgaactggctgaacaggtgctgcagagtttcgtggaatacggcaagggt
ctcgacttgcgatttctggcagcctatggcggcgtgagcatcaacccgcagatgatgaag
ttgcgcaagggcgtggatgtgctcgtcgccacgccgggccggctgctggatctcaatcgt
cagaacgcggtgcagttcgatcaagtgcagacgctggtgctggatgaagccgaccgcatg
ctggatctgggcttcgcacgcgaactcaacgccgtctttgccgcgttgccggtgcagcgc
cagacactgctgttttccgcgacgtttaccgacgacatccgcgcgatggcggcgagcatt
ctgcgcgatccggtcaacatcagcgtcagcccacccaatgtcaccgccagcaagatcaag
cagtgggtcgtgccggtggacaagcggaacaagcctgacctcttcatgcacctggtggcc
gagaacaactggggccacgcgctggtgttcgtcaagacccgcaatggcgtggattacctg
gcggccatgctgaacgatgccggctacgcggtcgacaccattcacggcgacaagccgcaa
ccggcgcgcctgcgtgcgctggagcgcttcaagacgggcgaagtgcagatgctggtggcc
accgatgtggctgcgcgcgggctggacatcgacgacttgccgctggtgatcaacgtcgat
ctgccgatcgtggcgcaagactacgtgcaccgtatcggccgtaccggccgcgcgggcgcg
agcggtgtggcggtatccctcgtgtgtgccgatgaagcaccgcaactggcggcgatcgag
gcgctgattcggcagacgctgcgtcgtgaagaggagccgggtttcgaggcggaacatcgc
gtgccggaaaccagcgcgacagggcagatcatcaagaaacccaaaaagccgaagaagccg
aaagtgccgcaggccgggatgagtgccatgccggcggctggcaagaagccacggccgcag
ggtggggaaggcaagcgcaagtcggccgggcagcgcgccggggcggcgggcaaggcgacg
agcctgtctagcggaagcccgttcagcgtgcaaaagccgcgcggcaaacccgccggcaag
gcggcggcgggggcgcggaaaccggccggcaagccggcgggtggtcgcggtacgcgctaa
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