Bradyrhizobium daqingense: LPJ38_00340
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Entry
LPJ38_00340 CDS
T07756
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bdg
Bradyrhizobium daqingense
Pathway
bdg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPJ38_00340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdg03019
]
LPJ38_00340
Enzymes [BR:
bdg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPJ38_00340
Messenger RNA biogenesis [BR:
bdg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPJ38_00340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
HEM4
Motif
Other DBs
NCBI-ProteinID:
UFS89282
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All DBs
Position
72806..74380
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AA seq
524 aa
AA seq
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MERTPLLTSFQDFGLAEPIARALREENYVTPTPIQAQTVPLALTGRDVVGIAQTGTGKTA
SFALPILHRLLENRIKPQPKTARVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVP
MGRQVRSLMQGVEVLVATPGRLLDLVQSNGLKLSSVEFLVLDEADRMLDMGFINDIRKIV
AKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTAERINQRIIQVDFSAKPS
FLARLLKEEPVNRALVFTRTKHGADKVVKTLEKAGIPASAIHGNKSQNHRERTLGLFRSG
EIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGADGTAISLVAGGEE
LSYLRDIERLIKVALPREDLRTDAGRRDAGPPPAQQRQGRPGGRPGQRPQGARHGDGRRT
DERHADGRRHGAGKGDGRHMDGRHGEGRHAEGRPVDGRPNEGHRAAKGARRRHGSGGKVN
SSPTDRSEQRPAHSAGKPDGIQGVAFLRRESRPNGRPNRNPHSH
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaacccctcttttgacttcgtttcaggacttcggcctcgccgaaccgatcgca
cgcgctcttcgtgaagagaactacgtcacccccaccccgatccaggcacagaccgtcccg
ctcgcactgaccggccgcgacgtcgtcggcatcgcccagaccggcaccggcaagaccgca
tccttcgcgctgccgatcctgcatcgcctgctcgagaaccgcatcaagccgcagcccaag
accgcccgcgtcctggtgctgtcgccgacccgcgaactgtccggccagatcctggacagc
ttcaacgcctatggccgccacatccgcctgtcgtcgacgctcgcgatcggcggcgtgccg
atgggccgccaggtccgctcgctgatgcaaggcgtcgaggttctggtcgccacgcccggc
cggctgctcgacctcgtgcagagcaacggcttgaagctgtccagcgtcgagttcctcgtg
ctcgacgaggcggaccgcatgcttgacatgggcttcatcaacgacatccgcaaaatcgtc
gccaagctgccgatcaagcggcagacgctgttcttctcggccaccatgccgaaggacatc
gccgagctcgccgatgccatgctgcgtgaccccgcccgtgtcgcggtgaccccggtctcc
tcgaccgccgagcggatcaaccagcgcatcatccaggtcgacttctccgccaagccgtcc
ttcctcgccaggctgctgaaggaagaaccggtcaaccgggctctggtcttcacccgtacc
aagcacggcgccgacaaggtcgtgaagacgctcgagaaggcgggcatccccgccagcgcc
atccacggcaacaagtcgcaaaaccatcgcgaacgcacgctgggcctgttccggtcgggc
gagatccgcaccctggtcgccactgacatcgccgcccgcggtatcgatgtcgatggcatc
acccacgtcatcaatttcgacctgcccaacgtgcccgagacctatgtccaccgcatcggt
cgcactgcgcgtgcgggcgccgacggcaccgcgatctcgctggtcgccggcggtgaggag
ctcagctatctccgcgacatcgagcggctgatcaaggtggcgctgccacgcgaggatctc
cgcaccgatgccggccgccgcgacgcgggccctcccccggcccagcagcgacagggccgg
ccgggcggccgtccaggccagcgtccgcagggtgcacgccatggtgacggcaggcgtacc
gacgaaaggcatgccgacggacgccgccatggcgccggcaagggcgacggacggcatatg
gacggaaggcacggcgaaggccgccatgccgagggcagacctgttgatggcaggcccaac
gaaggccacagggccgcgaagggggctcgccgtcgtcacggttccggtggtaaggtgaat
tcctcaccaaccgatcggtcggaacagcgtcccgcgcatagcgccggcaagcctgatgga
atacaaggcgttgcctttttgcgtcgcgagagtcgtcccaacggccgaccgaaccgcaac
cctcattcgcactag
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