Bradyrhizobium daqingense: LPJ38_00560
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Entry
LPJ38_00560 CDS
T07756
Symbol
pimA
Name
(GenBank) dicarboxylate--CoA ligase PimA
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
bdg
Bradyrhizobium daqingense
Pathway
bdg00061
Fatty acid biosynthesis
bdg00071
Fatty acid degradation
bdg01100
Metabolic pathways
bdg01212
Fatty acid metabolism
bdg02024
Quorum sensing
bdg04146
Peroxisome
Module
bdg_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
LPJ38_00560 (pimA)
00071 Fatty acid degradation
LPJ38_00560 (pimA)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
LPJ38_00560 (pimA)
09145 Cellular community - prokaryotes
02024 Quorum sensing
LPJ38_00560 (pimA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
bdg01004
]
LPJ38_00560 (pimA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bdg04147
]
LPJ38_00560 (pimA)
Enzymes [BR:
bdg01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
LPJ38_00560 (pimA)
Lipid biosynthesis proteins [BR:
bdg01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
LPJ38_00560 (pimA)
Exosome [BR:
bdg04147
]
Exosomal proteins
Exosomal proteins of breast milk
LPJ38_00560 (pimA)
Exosomal proteins of breast cancer cells
LPJ38_00560 (pimA)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
UFS89324
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All DBs
Position
complement(120941..122623)
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AA seq
560 aa
AA seq
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MTHPGEQYYPEGVRWDDTIVQGTLPDLLSKAAAEYGPRAALEFRDRAISYADLAARAERA
AAAFLRAGCGKDSSVALFLGNTPDHPVSFFGALRAGARVAHLSPLDGEIALTHKVSDSGS
RLLVTSNLKALLPTALKFLEKGLIDRLVVCEDDDWGKVGTPQAAIPNDPRIVTFKTFVEG
AAVPAAWPNVGADDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRAARGDVI
ERVICVLPLFHIYALTVVLLSSLRRGNLISLHQRFDVEAVMRDIEIKRATYFPGVPTMWI
AIAALPDLDKRDFSSLATIGSGGAPLPVEVASFFERKVGKKLKSGWGMTETCSPGTGHPP
TGPEKPGSIGLMLPGIELDVVALDDPRRVLPPGEVGEIRIKGPNVTRGYWNKPEGSADAF
VDGRFLTGDIGYMDADGYFFLVDRKKDMIISGGFNVYPQMIEQAIYTIPGVHEVIVLGIP
DPYRGEAAKAFIKLRPEAKPFSLDELRSQLAGKLGKHELPAAVEFVDDLPRTPVGKLSRH
ELRQQQKPSQSTQQTSGGRS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacccatcccggcgaacaatattatcccgagggcgtgcgttgggacgacaccatcgtc
cagggcacgctcccggacctgctgtcgaaggccgccgccgagtacggcccgcgcgccgcg
ctggaatttcgcgaccgcgccatctcctacgccgatctcgccgcgcgagccgagcgtgcg
gctgcggcgttccttcgcgccggctgcggcaaggattcctccgtcgcgctgttcctcggc
aacacgccggatcatcccgtcagcttcttcggtgcgctgagggccggcgcccgcgtcgcg
catctgtcgccgctcgacggcgagattgcgctgacgcacaaggtctccgattcaggatcg
cggctgctggtcacctcgaacctcaaggcgctgctgccgaccgcgctgaaattcctggag
aagggcctgatcgaccgcctcgtcgtctgcgaggacgatgattggggcaaggtcggcacg
ccgcaggccgcgatccccaacgatccccgcatcgtcacgttcaagaccttcgtcgagggc
gcggccgtgcccgcagcatggccgaacgtcggggccgacgacgtcgcgctgctgcaatat
accggcggcaccaccggcctgcccaagggcgcgatgctgacgcatggcaatctcacctcg
gcggtgtcgatctacgacgtctggggcaagccgtcgcgcgctgcacgtggcgacgtcatc
gagcgcgtgatctgcgtgctgccgctattccacatctatgcgctcaccgtggtgctgctg
tcctcgctgcgccgcggcaatttgatctcgctgcatcagcgcttcgacgtcgaggccgtg
atgcgcgacatcgagatcaagcgcgcgacatattttccgggcgtgccgacgatgtggatc
gcgattgccgcactgccggacctcgacaagcgcgatttctcctcgctcgccaccatcggc
tccggcggcgcgccgctgccggtcgaggtcgcgagcttcttcgagcgcaaggtcggcaag
aagctcaaaagcggctggggcatgaccgagacctgctcgcccggcaccggccatccgccc
accggccccgagaagcccggctcgatcggcctgatgttgcccggcatcgagctcgacgtc
gtcgcgctggacgacccgagacgcgtgctgccgccgggcgaagtcggcgagatccgcatc
aagggcccgaacgtcaccagaggctactggaacaagccggagggctccgcggacgccttc
gtcgacggccgcttcctcaccggcgacatcggctatatggatgcggacggctatttcttc
ctggtcgaccgcaagaaggacatgatcatctccggcggcttcaacgtctatccgcagatg
atcgagcaggcgatctacaccattcccggtgtgcacgaggtcatcgtgctcggcattccc
gacccctaccgcggggaagccgcaaaagccttcatcaagctcaggcccgaggcaaagccg
ttctcgctcgacgagctgcgcagccagctcgcgggcaagctcggcaagcacgaattgccg
gccgcggtcgagttcgtcgacgatctgccgcgcacgccggtcggaaagctgtcgcgtcac
gagttgcgccagcagcagaaaccgtcacaatccactcaacaaacatcaggaggtcgctct
tga
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