Bradyrhizobium daqingense: LPJ38_03605
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Entry
LPJ38_03605 CDS
T07756
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bdg
Bradyrhizobium daqingense
Pathway
bdg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPJ38_03605 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdg03019
]
LPJ38_03605 (pnp)
03016 Transfer RNA biogenesis [BR:
bdg03016
]
LPJ38_03605 (pnp)
Enzymes [BR:
bdg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LPJ38_03605 (pnp)
Messenger RNA biogenesis [BR:
bdg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LPJ38_03605 (pnp)
Transfer RNA biogenesis [BR:
bdg03016
]
Prokaryotic type
tRNA degradation factors
LPJ38_03605 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
DUF5813
Motif
Other DBs
NCBI-ProteinID:
UFS89889
LinkDB
All DBs
Position
789204..791363
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AA seq
719 aa
AA seq
DB search
MFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLT
VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIATVLSH
DMENDPDIVALVASSAALTLSGAPFKGPIGAARVGFANDEFILNPTLDEMVDTQLDLVVA
GTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTVIDNSA
LEKEMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKVIAHYFPEGQEPKYDKLRVAGVFKE
LEAKIVRWNILDTGKRIDGRDSKTVRNIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTG
EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH
EFPYTTRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRYAVLS
DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIEGITEEIMKVALGQAKEGRIHILGEMSK
ALTAARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS
SDGEAMKAAIKWIKSIASDPEVGQIYDGTVVKVMEFGAFVNFFGSKDGLVHISQLASSRV
QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGEDLEGKDKGEGEKAPREAAGE
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataagcattccgtcgagatcgactggggtggacgcccgctcaagctggaaacc
ggcaagatcgcccgccaggccgacggcgccgtcgtcgccacctacggcgagaccgtggtg
ctcgccaccgtggtcgcggcgaaggcgccgcgcgaaggcgtcgacttcctcccgctgacc
gtcgactatcaggagaagacctacgctgccggccgcattcccggcggctatttcaagcgc
gagggccgtccgaccgagaaggagacgctggtctcccgcctgatcgaccgtccgatccgt
ccgctgttcgtcgacggctggcgcaacgagacccaggtgatcgccaccgtgctgtcgcac
gacatggagaacgatccggatatcgtcgcgctggtggcctcgtcggctgcgctgaccctg
tccggcgcgccgttcaagggcccgatcggcgccgcccgcgtcggcttcgccaatgacgaa
ttcatcctcaacccgacgctcgacgagatggtcgacacccagctcgacctcgtcgtcgcc
ggcaccgccgacgccgtgctgatggtggaatcggaagccaaggaactgaacgaagacatc
atgctcggcgccgtgatgttcggtcaccgccacttccagccggtcatcaacgcgatcatc
gagctcgcagagaaggccgccaaggagccgcgcgaagtcaccgtcatcgacaattcggcg
ctcgagaaggaaatgctcggcctcgtcgagcaggagctgcgcgccgcctacgccattccg
gtgaagcaggaccgctacgccgcggtcggcaaggtcaaggaaaaggtgatcgcccactac
ttccccgaagggcaggagccgaaatacgacaagctgcgagtcgccggcgtgttcaaggag
ctcgaagccaagatcgtccgctggaacatcctggacaccggcaagcgcatcgacggccgc
gacagcaagaccgtgcgcaacatcgtcgccgaagtcggcgtgctgccccgcgcgcacggc
tcggcgctgttcacccgcggtgagacccaggcgatggtcgtgaccacgctcggtaccggc
gaggacgagcagtacatcgacgcgctgtcggggacgtacaaggagacgttcctgctgcac
tacaacttcccgccctactcggtcggcgagaccggccgcctcggcggtaccaagcgccgc
gagatcggccacggcaagctcgcctggcgcgcgatccatccggtgctgccgccgcaccac
gagttcccctacaccacgcgcgtggtgtcggagatcaccgagtccaacggctcctcgtcg
atggcgtcggtctgcggcgcctcgctggcgctgatggatgccggcgtgccgctgaagcgg
ccgaccgcgggcatcgccatgggcctgatcctcgaagataagcgctatgcggttctctcg
gacatcctcggtgacgaagaccatctcggcgacatggacttcaaggtggccggcaccgag
cagggcatcacctcgctccagatggacatcaagatcgagggcatcaccgaagagatcatg
aaggtggcgctcggccaggccaaggaaggtcgcatccatatcctgggtgagatgtccaag
gcactgactgctgcgcgcgccgagctcggcgaatacgcaccgcgcatcgagaccttcaag
atcgccaccgacaagatccgcgaagtgatcggcaccggcggcaaggtgatccgcgagatc
gtcgagaagaccggcgccaaggttaacatcgaggacgacggcaccgtcaaggtcgcctcc
agcgacggcgaagccatgaaggccgcgatcaagtggatcaagtcgatcgcgtcggatccg
gaagtcggccagatctatgacggcaccgtcgtcaaggtcatggagttcggcgccttcgtg
aacttcttcggctccaaggacggtctcgtccacatcagccagctcgcttcgtcgcgcgtg
cagaagacctccgacgtcgtcaaggaaggcgacaaggtcaaggtcaagctgctcggcttc
gacgaccgcggcaagacccgcctgtcgatgaaggtggtcgaccagaccaccggcgaggac
ctcgaaggcaaggataagggcgagggcgagaaggccccgcgcgaagccgccggcgagtaa
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