Bradyrhizobium daqingense: LPJ38_04680
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Entry
LPJ38_04680 CDS
T07756
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bdg
Bradyrhizobium daqingense
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdg03032
]
LPJ38_04680
03400 DNA repair and recombination proteins [BR:
bdg03400
]
LPJ38_04680
Enzymes [BR:
bdg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LPJ38_04680
DNA replication proteins [BR:
bdg03032
]
Prokaryotic type
DNA Topoisomerases
LPJ38_04680
DNA repair and recombination proteins [BR:
bdg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LPJ38_04680
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF905
Motif
Other DBs
NCBI-ProteinID:
UFS90092
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All DBs
Position
1020618..1021784
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AA seq
388 aa
AA seq
DB search
MMDQQNLGTMRPASADPAAIALAKALGQWPKPAGFRRPSPKKTFDGAPATVEALAKELGL
RLGDQNELTIRRIRRGKGYSFVRPNGAHIRDARTIRRLHAMAVPPAYREVRYSADPSSHL
QAVGRDAAGRLQYRYHADWEKVREHRKAHRLEKLVGALPKIRRKVSAFLSGDEPTREFAL
SAVIELIARTAIRPGNESYARLNGTRGATTLLKSNVTLEDDCFVLTFKAKGGKAVRKECD
AAKLVRAIGILQGVPGKRMFQYRDAYGIVRAVNTTQVNAFLREIAGIKISLKDFRTLMAS
AVVVESLSRITPATSQRGRKKQVLDAIRAAADQLSNTPAICRKSYVHDTIVTAFEDGILE
RFAATMKGQRSQARREQLLAQVVATAAV
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgatggatcagcagaatctcgggacgatgcggcccgcttcagccgatcctgcggccatt
gccctcgccaaagccctcggacaatggcccaagccggccggtttcaggcgtcccagcccc
aaaaaaaccttcgacggggcgccggcgacggtcgaggcgctcgccaaggagctcggcctg
cggctcggcgaccagaacgagctgaccattcgccgcatcaggcgtggcaagggctattcc
ttcgtgcgacccaacggcgcccatatccgcgacgcccgcaccatccgccggctgcacgcc
atggcggtgccgccggcctatcgcgaggtgcgctactccgccgatccgagctcgcatctg
caggccgtgggacgcgatgccgcgggccggctgcaatatcgctatcatgccgactgggag
aaggttcgcgagcatcgcaaggcgcatcgcctggagaagctcgtgggcgcgttgccgaag
atccggcgcaaggtctcggcattcctgtcgggtgacgagccgacgcgtgaattcgcgctt
tcggccgtgatcgagctgatcgcccgcacggcaatccgccccggcaatgaatcctatgct
cgtctcaacggcacccgcggcgccaccacgctgctcaagtccaacgtgacgctggaagac
gattgcttcgtgctgaccttcaaggcgaagggcggcaaggccgtgcgcaaggagtgcgat
gccgccaagctggtgcgcgcaatcggcattttgcagggcgtgcccggcaaacgcatgttc
cagtatcgcgacgcctacggcatcgtgcgcgcggtcaacaccacgcaggtgaacgcgttc
ttgcgcgagatcgccggcatcaagatctcgctgaaggatttccgcacgctgatggcgtcc
gccgtcgtcgtggaatcgctgtcgcggatcacgccggcgaccagccagcgcggccgcaag
aagcaggtgctggacgcgatccgtgccgccgccgaccagctctccaacacgccggcgatc
tgccgcaagagctacgtccacgacaccatcgtcaccgccttcgaggacggcatcctcgaa
cgcttcgccgcgaccatgaagggccagcgctcgcaagcgcggcgcgagcagctgctggcg
caggtggtggcgaccgcggcagtgtga
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